View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19142_low_11 (Length: 205)

Name: NF19142_low_11
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19142_low_11
NF19142_low_11
[»] chr2 (1 HSPs)
chr2 (17-185)||(4532806-4532974)
[»] scaffold0006 (2 HSPs)
scaffold0006 (19-185)||(214728-214904)
scaffold0006 (19-145)||(128339-128475)
[»] chr1 (7 HSPs)
chr1 (57-126)||(19072648-19072717)
chr1 (57-126)||(19120538-19120607)
chr1 (135-185)||(23833566-23833616)
chr1 (19-52)||(19073508-19073541)
chr1 (19-52)||(19121398-19121431)
chr1 (120-176)||(19072552-19072608)
chr1 (120-176)||(19120442-19120498)
[»] chr6 (3 HSPs)
chr6 (60-126)||(21801657-21801723)
chr6 (120-176)||(21801763-21801819)
chr6 (19-52)||(21800837-21800870)
[»] chr5 (1 HSPs)
chr5 (130-185)||(7649285-7649340)
[»] chr7 (1 HSPs)
chr7 (135-185)||(4799946-4799996)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 4532806 - 4532974
Alignment:
Q  17 atgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4532806 atgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaag 4532905  T
Q  117 tgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataact 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4532906 tgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttagatataact 4532974  T

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Target: scaffold0006 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 214728 - 214904
Alignment:
Q  19 gaacagtgatgagcaacaaaggccacaagggatgagtga----------ccaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttt 108  Q
    ||||||||||||||||||||||||||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  214728 gaacagtgatgagcaacaaaggccacaagggatgattgattatgtataaccaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttt 214827  T
Q  109 tatgaaagtgaaaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataact 185  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | ||||||    
T  214828 tatgaaagtgaaaacagaggggaggtttttgatgtttgggaaaatggaggggatgttaggtgcatttagaaataact 214904  T

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Target: scaffold0006; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 128339 - 128475
Alignment:
Q  19 gaacagtgatgagcaacaaaggccacaagggatgagtgac----------caggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttt 108  Q
    |||| |||||||||||||||||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  128339 gaacggtgatgagcaacaaaggccacaagggatgattgattatgtataatcaggaatagaaataaattctcgcaacaaaaggcttgaattttaagagttt 128438  T
Q  109 tatgaaagtgaaaacagaggggaggtttttgatgttt 145  Q
    |||||||||||||||||||||||| ||||||||||||    
T  128439 tatgaaagtgaaaacagaggggagctttttgatgttt 128475  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 19072717 - 19072648
Alignment:
Q  57 accaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19072717 accaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 19072648  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 19120607 - 19120538
Alignment:
Q  57 accaggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19120607 accaggaatagaaataaattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 19120538  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 23833616 - 23833566
Alignment:
Q  135 ttttgatgttttggaaattagaggggatgttaggtgcatttatatataact 185  Q
    ||||||||||| ||||| | |||||||||||||||||||||| ||| ||||    
T  23833616 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaact 23833566  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 19073541 - 19073508
Alignment:
Q  19 gaacagtgatgagcaacaaaggccacaagggatg 52  Q
    |||||||||||||||||||||| |||||||||||    
T  19073541 gaacagtgatgagcaacaaagggcacaagggatg 19073508  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 19121431 - 19121398
Alignment:
Q  19 gaacagtgatgagcaacaaaggccacaagggatg 52  Q
    |||||||||||||||||||||| |||||||||||    
T  19121431 gaacagtgatgagcaacaaagggcacaagggatg 19121398  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 19072608 - 19072552
Alignment:
Q  120 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 176  Q
    ||||||||||||| |||||||||||| ||||  | |||||||||||  |||||||||    
T  19072608 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttagtgcattta 19072552  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 19120498 - 19120442
Alignment:
Q  120 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 176  Q
    ||||||||||||| |||||||||||| ||||  | |||||||||||  |||||||||    
T  19120498 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttagtgcattta 19120442  T

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Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 21801657 - 21801723
Alignment:
Q  60 aggaatagaaataaattctcgcaacaaaaggcttgagttttgagagttttatgaaagtgaaaacaga 126  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21801657 aggaatagaaatacattctcgcaacaaaaggcttgagttttaagagttttatgaaagtgaaaacaga 21801723  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 21801763 - 21801819
Alignment:
Q  120 aaacagaggggaggtttttgatgttttggaaattagaggggatgttaggtgcattta 176  Q
    ||||||||||||| |||||||||||| ||||  | ||||||||||| ||||||||||    
T  21801763 aaacagaggggagctttttgatgtttgggaatatggaggggatgtttggtgcattta 21801819  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 21800837 - 21800870
Alignment:
Q  19 gaacagtgatgagcaacaaaggccacaagggatg 52  Q
    |||||||||||||||||||||| |||||||||||    
T  21800837 gaacagtgatgagcaacaaagggcacaagggatg 21800870  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 7649285 - 7649340
Alignment:
Q  130 gaggtttttgatgttttggaaattagaggggatgttaggtgcatttatatataact 185  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||||| ||| ||||    
T  7649285 gaggtttttgatgtttcagaaaatagaggggatgttaggtccatttagatagaact 7649340  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 4799996 - 4799946
Alignment:
Q  135 ttttgatgttttggaaattagaggggatgttaggtgcatttatatataact 185  Q
    ||||||||||| ||||| | |||||||||||||||||||||| ||| ||||    
T  4799996 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaact 4799946  T

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