View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19142_low_5 (Length: 362)

Name: NF19142_low_5
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19142_low_5
NF19142_low_5
[»] chr7 (4 HSPs)
chr7 (102-347)||(31200597-31200842)
chr7 (14-97)||(31200879-31200962)
chr7 (182-271)||(39051324-39051413)
chr7 (181-265)||(285651-285733)
[»] chr5 (6 HSPs)
chr5 (181-264)||(10353940-10354023)
chr5 (181-246)||(33900041-33900106)
chr5 (182-270)||(29638812-29638900)
chr5 (198-245)||(1623346-1623393)
chr5 (182-245)||(38475912-38475975)
chr5 (182-211)||(1436911-1436940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (182-276)||(250355-250449)
[»] chr8 (2 HSPs)
chr8 (182-271)||(3694151-3694240)
chr8 (182-234)||(14294405-14294457)
[»] chr4 (3 HSPs)
chr4 (182-319)||(19141923-19142060)
chr4 (182-270)||(41500069-41500157)
chr4 (182-276)||(43405533-43405627)
[»] chr3 (2 HSPs)
chr3 (182-270)||(675658-675746)
chr3 (181-276)||(27836735-27836828)
[»] chr1 (6 HSPs)
chr1 (182-270)||(4816197-4816285)
chr1 (181-333)||(8265646-8265795)
chr1 (182-270)||(22581695-22581783)
chr1 (182-270)||(34059766-34059854)
chr1 (217-270)||(10069247-10069300)
chr1 (181-217)||(12371580-12371616)
[»] scaffold0018 (1 HSPs)
scaffold0018 (181-276)||(38677-38770)
[»] chr2 (1 HSPs)
chr2 (181-279)||(40142214-40142312)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 102 - 347
Target Start/End: Complemental strand, 31200842 - 31200597
Alignment:
Q  102 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200842 tcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttacttaatttacattgtactaaaatgttgaataatcaactcatta 31200743  T
Q  202 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcgttatattcttcacaacctcca 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  31200742 tcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcgttatattgttcacaacctcca 31200643  T
Q  302 tagcaaaaaatgatcgttacacagttgttgtgacaattgtaaaatt 347  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31200642 tagcaaaaaatgatcgttaaacagttgttgtgacaattgtaaaatt 31200597  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 31200962 - 31200879
Alignment:
Q  14 aggacctgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgggtgt 97  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200962 aggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgggtgt 31200879  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 271  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||||||| ||| |||||||||||||||| ||||||    
T  39051324 gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt 39051413  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 285651 - 285733
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatctt 265  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || |||||||||    
T  285651 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatctt 285733  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatct 264  Q
    |||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||||||||    
T  10354023 tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct 10353940  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa 246  Q
    |||||||||||||||||||||||||||||| || | | ||||| ||||||||||  ||||||||||    
T  33900106 tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa 33900041  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  29638900 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt 29638812  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q  198 attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 245  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||    
T  1623346 attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca 1623393  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca 245  Q
    ||||||||||||||||||||||||  || | ||||| |||||| | ||| ||||||||||||||    
T  38475975 gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca 38475912  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgt 211  Q
    ||||||||||||||||||||||||||||||    
T  1436911 gttgaataatcaactcattatcaatgttgt 1436940  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 276  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||| ||||    
T  250355 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta 250449  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccattt 271  Q
    ||||||||||||| ||||  ||||| |||||   || |||||| | |||||||||||||||||||| |||||||||||||||| ||||||    
T  3694151 gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt 3694240  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 14294457 - 14294405
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataa 234  Q
    ||||||||||| | | |||||||||| ||||||||| |||||| |||||||||    
T  14294457 gttgaataatccattaattatcaatggtgtcgaacacatctctcttaatataa 14294405  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 319
Target Start/End: Complemental strand, 19142060 - 19141923
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcgt 281  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||  |||| ||      
T  19142060 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaa 19141961  T
Q  282 tatattcttcacaacctccatagcaaaaaatgatcgtt 319  Q
    | ||  |||||||| || ||||||| |||||| |||||    
T  19141960 tctagacttcacaatcttcatagcagaaaatgctcgtt 19141923  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  41500069 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 41500157  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 276  Q
    |||||||||||||||||| |||||| ||||||  ||||||||| | ||||||||| ||  |||||| |||||| || |||||| |||||| ||||    
T  43405627 gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta 43405533  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  675658 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 675746  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 276  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  27836828 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 27836735  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| |||||| |||||    
T  4816285 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 4816197  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 333
Target Start/End: Original strand, 8265646 - 8265795
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgcg 280  Q
    ||||||| |||||||  ||||||||| ||||| || || |||||   |||||||||||||||||||| |||||| |||||||||| ||||| ||||  |     
T  8265646 tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatctt-catttgattacaca 8265742  T
Q  281 ttatattcttcacaacctccatagcaaaaaatgatcgttacacagttgttgtg 333  Q
     | || | |||||||||| ||||||| |||| || ||||  ||||||||||||    
T  8265743 atctagttttcacaaccttcatagcataaaaggaccgtttgacagttgttgtg 8265795  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 22581783 - 22581695
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||  |||||| |||||    
T  22581783 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcccatcatctcccatt 22581695  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q  182 gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    |||||||||||||||||| |||||| |||||   || |||||| | ||||||||| || ||||||| ||||||||| |||||| |||||    
T  34059854 gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt 34059766  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q  217 atatctcttttaatataagtcacaagacaataattcatccattcatcttccatt 270  Q
    ||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10069300 atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt 10069247  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 12371580 - 12371616
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaaca 217  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  12371580 tgttgaataatcaactcatcatcaatgttgccgaaca 12371616  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcatta 276  Q
    |||||| |||| ||||| ||||||||||||||||| |||||||||| |||||  ||||| |||||||  ||| || ||||||||||| ||| ||||    
T  38770 tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta 38677  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 279
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q  181 tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattcatcttccatttcattatgc 279  Q
    ||||||||||||||||||  |||||||||||| |||| |   || | |||||||||||  |||||||  |||||||| |||||| |||||| |||||||    
T  40142312 tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc 40142214  T

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