View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19142_low_6 (Length: 258)
Name: NF19142_low_6
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19142_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 52769447 - 52769672
Alignment:
| Q |
13 |
attctgtataatatatgat----tgattgattagtgagaatgtgaaaagaagaaagatacctgaagaaaatgactgtatctgacggcctgaaagtcatct |
108 |
Q |
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| T |
52769447 |
attctgtataatatatgattgattgattgattagtgagaatgtgaaaagaagaaagatacctgaagaaaatgactgtatctgacggcctgaaagtcatct |
52769546 |
T |
|
| Q |
109 |
ttaatatagaggagagcacctgatataacacctgaacaaaacaagaatcataatgttattgttattgttattgttattgagagaatatataattcataag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52769547 |
ttaatatagaggagagcacctgatataacacctgaacaaaacaagaatcatca------tgttattgttattgttattgagagaatatataattcataag |
52769640 |
T |
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| Q |
209 |
atacgtaccagtgtcgtagccaaagagtaatc |
240 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52769641 |
atacgtaccagtgtcgtagccaaagagtaatc |
52769672 |
T |
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