View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19142_low_7 (Length: 258)
Name: NF19142_low_7
Description: NF19142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19142_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 28690460 - 28690697
Alignment:
| Q |
17 |
tataaaagtactttgtaaagcctaaatagtcattgcatgagaaacaaaaatatacaattaggaatatgaattgataaataggtctaagtgtgacataaat |
116 |
Q |
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| T |
28690460 |
tataaaagtactttgtaaagcctaaatagtgattgcatgagaaacaaaaatatacaattagcaatacgaattgataactaggtctgagtgtgacataaat |
28690559 |
T |
|
| Q |
117 |
gtgcattatagtaaatatgtattaatgtttcaggccctggctgttcttcaattggctatggagaagcagaggaacttggaccctttttcccccaaaatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28690560 |
gtgcattatagtaaatatgtattaatgtttcaggccctggttgttcttcaattggctatggagaagcagaggaacttggaccctttttcccccaaaatag |
28690659 |
T |
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| Q |
217 |
cagccaacctaagctcaagttgaacccatattcttgga |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28690660 |
cagccaacctaagctcaagttgaacccatattcttgga |
28690697 |
T |
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