View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_high_12 (Length: 263)
Name: NF19143_high_12
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9642863 - 9643105
Alignment:
| Q |
1 |
aattgagaatgaatatggggacatcatgtggaattacaaagatgctgggaaggcatatgttcaatgggctgctcaaatggctctatcacaaaacattggt |
100 |
Q |
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| T |
9642863 |
aattgagaatgaatatggggacatcatgtggaattacaaagatgctgggaaggcatatgttcaatgggctgctcagatggctctagcacaaaacattggt |
9642962 |
T |
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| Q |
101 |
gttccatggatcatgtgtcaacaacaagatgctcctcaacctatcatcaatacttgcaatggatattattgtcacaattttcaacctaacaatccaaaaa |
200 |
Q |
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| T |
9642963 |
gttccatggatcatgtgtcaacaacaagatgctcctcaacctatcatcaatacttgcaatggatattattgtcacaattttcaacctaacaatccaaaaa |
9643062 |
T |
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| Q |
201 |
gtcctaaaatcttcactgaaaattggattggttggttccaaaa |
243 |
Q |
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| T |
9643063 |
gtcctaaaattttcactgaaaattggattggttggttccaaaa |
9643105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10544809 - 10545051
Alignment:
| Q |
1 |
aattgagaatgaatatggggacatcatgtggaattacaaagatgctgggaaggcatatgttcaatgggctgctcaaatggctctatcacaaaacattggt |
100 |
Q |
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| T |
10544809 |
aattgagaatgaatatggagatatcatgtggaatttcaaagaaccagggaaagcatatattaaatgggctgctcaaatggctttagcacaaaatatcggt |
10544908 |
T |
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| Q |
101 |
gttccatggatcatgtgtcaacaacaagatgctcctcaacctatcatcaatacttgcaatggatattattgtcacaattttcaacctaacaatccaaaaa |
200 |
Q |
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| T |
10544909 |
gttccatggttcatgtgtcaacaaaatgatgctcctcaacctatcatcaatacttgcaatgggtattattgtcacaattttaaacctaataacccaaaaa |
10545008 |
T |
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| Q |
201 |
gtcctaaaatcttcactgaaaattggattggttggttccaaaa |
243 |
Q |
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| T |
10545009 |
gtccaaaaatgttcactgaaaattggattggatggtttcaaaa |
10545051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 278720 - 278888
Alignment:
| Q |
75 |
aaatggctctatcacaaaacattggtgttccatggatcatgtgtcaacaacaagatgctcctcaacctatcatcaatacttgcaatggatattattgtca |
174 |
Q |
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| T |
278720 |
aaatggctttagctcaaaatattggtgtcccatggatcatgtgcaagcaaaaaaatgctccagccactattatcgatacatgcaatggctattattgtga |
278819 |
T |
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| Q |
175 |
caattttcaacctaacaatccaaaaagtcctaaaatcttcactgaaaattggattggttggttccaaaa |
243 |
Q |
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| T |
278820 |
cactttcaagccaaacaatcctaaaagccctaaaatatttacagagaattgggttggctggttccaaaa |
278888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 18584445 - 18584494
Alignment:
| Q |
92 |
aacattggtgttccatggatcatgtgtcaacaacaagatgctcctcaacc |
141 |
Q |
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| T |
18584445 |
aacattggagtcccatggatcatgtgccaacaacctgatgctcctcaacc |
18584494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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