View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19143_high_13 (Length: 258)
Name: NF19143_high_13
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_high_13 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 40464680 - 40464458
Alignment:
| Q |
18 |
cagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattac |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40464680 |
cagcttactggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattac |
40464581 |
T |
|
| Q |
118 |
caggttggtacaaccttctttctagctccaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40464580 |
caggttggtacaaccttctttctagctcaaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaagaa |
40464481 |
T |
|
| Q |
218 |
ttaccgatcgaactagcgagtct |
240 |
Q |
| |
|
|||||| || ||||||||||||| |
|
|
| T |
40464480 |
ttaccggtcaaactagcgagtct |
40464458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 77696 - 77801
Alignment:
| Q |
18 |
cagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattac |
117 |
Q |
| |
|
||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || |||| |
|
|
| T |
77696 |
cagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgccttac |
77795 |
T |
|
| Q |
118 |
caggtt |
123 |
Q |
| |
|
|||||| |
|
|
| T |
77796 |
caggtt |
77801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 40888588 - 40888483
Alignment:
| Q |
18 |
cagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattac |
117 |
Q |
| |
|
||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || |||| |
|
|
| T |
40888588 |
cagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgccttac |
40888489 |
T |
|
| Q |
118 |
caggtt |
123 |
Q |
| |
|
|||||| |
|
|
| T |
40888488 |
caggtt |
40888483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
33 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
126 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| |||||||||| ||||| || ||||||||||||| |
|
|
| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
42 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
91 |
Q |
| |
|
||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 28270825 - 28270720
Alignment:
| Q |
18 |
cagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattac |
117 |
Q |
| |
|
||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || |||| |
|
|
| T |
28270825 |
cagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgccttac |
28270726 |
T |
|
| Q |
118 |
caggtt |
123 |
Q |
| |
|
|||||| |
|
|
| T |
28270725 |
caggtt |
28270720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University