View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_11 (Length: 267)
Name: NF19143_low_11
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 647152 - 646895
Alignment:
| Q |
10 |
agatgaacattaatagtatcaaaatcacaacgttcaattgctaagagaaaattccaatttcattttccctcctcttatttaagaattcaatttacctaat |
109 |
Q |
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| T |
647152 |
agatgaacattaatagtatcaaaatcacaacgttcaattgctaagagaaaattccaatttcattttccctcctcttatttaagaattcaatttacctaat |
647053 |
T |
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| Q |
110 |
gaatttctaaaataagtatcaaatactccaagtcgtttaccaacataacatttgtccaattggactcgataccttaagcaaagtattaagtttgagccta |
209 |
Q |
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| T |
647052 |
gaatttctaaaataagtatcaaatactccaagtcgtttaccaacataacatttgtccaactggactcgataccttaagcaaagtattaagtttgagccta |
646953 |
T |
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| Q |
210 |
atggatggaaaaaatgtggttgtgaggagagaccccggtagagtcttcgcatcaataa |
267 |
Q |
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| T |
646952 |
gtggatggaaaaaatgtgattgtgaggagagaccctggtagagtcttcgcatcaataa |
646895 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 684502 - 684444
Alignment:
| Q |
66 |
atttcattttccctcctcttatttaagaattcaatttacctaatgaatttctaaaataa |
124 |
Q |
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| T |
684502 |
attttattttacctcctcttatttaagaattcattttccctcgtaaatttctaaaataa |
684444 |
T |
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