View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_12 (Length: 264)
Name: NF19143_low_12
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10265378 - 10265145
Alignment:
| Q |
1 |
cagtccagatgaagtattatctagtccagattttcaccaatcactctactgtcacctcttatgtggactacttttcagagaaggagttagtttaatttca |
100 |
Q |
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| T |
10265378 |
cagtccagatgaagtaatatttagtccagattttcaccaatcactctactgtcacctcttatgtggactatttttcagagaagaagttagtttaatttca |
10265279 |
T |
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| Q |
101 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaataggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265278 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaataggg |
10265179 |
T |
|
| Q |
201 |
taacacagcgatccattagaactgctatgtctaa |
234 |
Q |
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||||||| | |||||||||||||||||||||||| |
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| T |
10265178 |
taacacatccatccattagaactgctatgtctaa |
10265145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10273075 - 10272842
Alignment:
| Q |
1 |
cagtccagatgaagtattatctagtccagattttcaccaatcactctactgtcacctcttatgtggactacttttcagagaaggagttagtttaatttca |
100 |
Q |
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|||||||||||||||| ||| |||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10273075 |
cagtccagatgaagtaatatttagtcctgattttcagcaaacactctactgccacctcttatgtggactacttttcagagaagaagttagtttaatttca |
10272976 |
T |
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| Q |
101 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaataggg |
200 |
Q |
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| T |
10272975 |
gcaccatttgcacacagccttgtgaatgctttcagaacatttgaacaagtttgggaggaacttgttactgatatcagagaaggtgttcttagcagtagaa |
10272876 |
T |
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| Q |
201 |
taacacagcgatccattagaactgctatgtctaa |
234 |
Q |
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| T |
10272875 |
tcacacatccattcattagaactgctatgtctaa |
10272842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10284317 - 10284087
Alignment:
| Q |
1 |
cagtccagatgaagtattatctagtccagattttcaccaatcactctactgtcacctcttatgtggactacttttcagagaaggagttagtttaatttca |
100 |
Q |
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|||||||||||| ||| || ||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
10284317 |
cagtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccacctcttatgtggactacttttcagagaagaagttcaattggtttcg |
10284218 |
T |
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| Q |
101 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaataggg |
200 |
Q |
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|| ||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
10284217 |
tccacatttgcacatagcattgtgaatgctttcagaacatttgaacaaatttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaa |
10284118 |
T |
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| Q |
201 |
taacacagcgatccattagaactgctatgtc |
231 |
Q |
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| T |
10284117 |
tcacacatccatccattagaactgctatgtc |
10284087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 10243464 - 10243263
Alignment:
| Q |
30 |
attttcaccaatcactctactgtcacctcttatgtggactacttttcagagaaggagttagtttaatttcatcaacatttgcacacagccttgtgtatgc |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||| |||||||| | || ||||||||||||||||||||||| ||| |||| ||||| |
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| T |
10243464 |
attttcaccaatcactctactgccacctcttatgtggactgctttgcagagaagaaattcaattaatttcatcaacatttgcacatagcattgtctatgc |
10243365 |
T |
|
| Q |
130 |
tttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaatagggtaacacagcgatccattagaactgctatg |
229 |
Q |
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||||||||| ||||||||||||||||| |||||| || ||| |||| ||||||||||||||||| ||| | ||||| | ||||||||||||||| ||| |
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| T |
10243364 |
tttcagaacctttgaacaagtttgggaagaacttattactgacatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgcaatg |
10243265 |
T |
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| Q |
230 |
tc |
231 |
Q |
| |
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|| |
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| T |
10243264 |
tc |
10243263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 48367535 - 48367626
Alignment:
| Q |
101 |
tcaacatttgcacacagccttgtgtatgctttcagaacatttgaacaagtttgggaggaacttgtttttgatatcagagaaggtgttcttag |
192 |
Q |
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|||||||||||||| ||| |||| |||| |||||| | ||||||||||||||||| || ||| | |||||| ||||||||||||||||| |
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| T |
48367535 |
tcaacatttgcacatagcattgttcatgccttcagatcctttgaacaagtttgggaagagctttgtaatgatataagagaaggtgttcttag |
48367626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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