View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19143_low_3 (Length: 419)
Name: NF19143_low_3
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 38190236 - 38189843
Alignment:
| Q |
16 |
cttttttccctctcattcatcatgacattggaaatgaaataccaatacatctgcaaacgatccagtatgttgcgtttacaacatggttaggtacgttgaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190236 |
cttttttccctctcattcatcatgacattggaaatgaaataccaatacatctgcaaacgatccagtatgttgcgtttacaacatggttaggtacgttgaa |
38190137 |
T |
|
| Q |
116 |
gcccttctttttgttctaaggttgtatttaagtgataactaactctttgttttctgacatttggacgaaaaggcagtttcatattcttcttgtattcata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
38190136 |
gcccttctttttgttctaaggttgtatttaagtgataactaactctttgttttctgacatttggacgaaaaggcagtttcacattcttcttgtgttcata |
38190037 |
T |
|
| Q |
216 |
tatatgcttaaaaccataactgaagttacaaatcatttaaaacttaaaagtactcgatcttttgcttcatgagccttatagttcagtattttttgcataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190036 |
tatatgcttaaaaccataactgaagttacaaatcatttaaaacttaaaagtactcgatcttttgcttcatgagccttatagttcagtattttttgcataa |
38189937 |
T |
|
| Q |
316 |
gctataatttttgtatgctagtaaataaaatgcatatgcatttcaggactttaagtcctttctttttaactatttaaaagcattgtttcctttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189936 |
gctataatttttgtatgctagtaaataaaatgcatatgcatttcaggactttaagtcctttctttttaactatttaaaagcattgtttcctttg |
38189843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 16186768 - 16186676
Alignment:
| Q |
16 |
cttttttccctctcattcatcatgacattggaaatgaaataccaatacatctgcaaacgatccagtatgttgcgtttacaacatggttaggta |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||| ||| |||||| |||| ||| ||||||||||||||| |
|
|
| T |
16186768 |
cttttttccccatcattcatcatgacattggaactgaaataccaattcatcttcaaaggatgcagtatattgcattttcaacatggttaggta |
16186676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University