View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_5 (Length: 373)
Name: NF19143_low_5
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 2876541 - 2876894
Alignment:
| Q |
13 |
aatatgctggagaattttttgagcaggaaacatctgctaagtttcgtagccgtggagttgcaccaaagaannnnnnnncaagctttttctattaaatttt |
112 |
Q |
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| T |
2876541 |
aatatgctggagaattttttgagcaggaaacatctgctaagtttcgtagccgtggagttgcaccaaagaattttttttcaagctttttctattaaatttt |
2876640 |
T |
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| Q |
113 |
aaaccaaataaggactgaattcttgatggattggttacgcgatgttcaactc-----------tgaagagcctaaggccatcaagctgcaaaatcagata |
201 |
Q |
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| T |
2876641 |
aaaccaaataaggactgaattcttgatggattggttacgcgatgttcaactctgtatatactctgaagagcctaagaccatcaagctgcaaaatcagata |
2876740 |
T |
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| Q |
202 |
acataatgatctgcaagttgataggatgtcactttgttggggtctacgaatagtctatttctcattatgagggactaaaaactgcatttgtaaagatttc |
301 |
Q |
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| T |
2876741 |
acataatgatctgcaagttgataggatgtcactttgttggggtctacgaatagtctatttctcattatgagggactaaaaactgcatttgtaaacatttc |
2876840 |
T |
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| Q |
302 |
ctctttcttaatttgaaggacttaaaatatgtttaatccgtcccaagtccaaca |
355 |
Q |
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| T |
2876841 |
ctctttcttaatttgaaggacttaaaatatgtttaatccgtcccaagtccaaca |
2876894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 2847420 - 2847464
Alignment:
| Q |
107 |
aattttaaaccaaataaggactgaattc-ttgatggattggttac |
150 |
Q |
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| T |
2847420 |
aattttaaaccaaataaggactgaattctttgatggattggttac |
2847464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 2859257 - 2859301
Alignment:
| Q |
107 |
aattttaaaccaaataaggactgaattc-ttgatggattggttac |
150 |
Q |
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| T |
2859257 |
aattttaaaccaaataaggactgaattctttgatggattggttac |
2859301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 2871503 - 2871548
Alignment:
| Q |
37 |
aggaaacatctgctaagtttcgtagccgtggagttgcaccaaagaa |
82 |
Q |
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| T |
2871503 |
aggaaacagctgcaaagtttcgtagtcgtggagttgcaccaaagaa |
2871548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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