View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_6 (Length: 368)
Name: NF19143_low_6
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 40739325 - 40739655
Alignment:
| Q |
10 |
aatattagttctccttttattccactaattatttaaaaataaacaagaaatcaattctatattttaaatttttgtgaatgtgtaagatttatgatcatag |
109 |
Q |
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| T |
40739325 |
aatattagttctccttttattccactaattatttaaaaataaacaagaaatcaattctatattttaaatttttgtgaatgtgtaagatttatgatcatag |
40739424 |
T |
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| Q |
110 |
ttttgtcattacggaagactttattttnnnnnnnntactaacaagtgcctttaaaatacttgttaaagaagccaaacaaagaagttttacgttaaaaacg |
209 |
Q |
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| T |
40739425 |
ttttgtcattacggaagactttatcttttaaaaaatactaacaagtgcctttgaaatacttgttaaagaagccaaacaaagaagttttacgttaaaaacg |
40739524 |
T |
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| Q |
210 |
attcttttttatgtttgaaaaattgactacacaattttaaatgcaatattgatatatttgataaccttaacaagtgctacagagctatatatattgttag |
309 |
Q |
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| T |
40739525 |
attttttttt---tttgaa--------tacacaattttaaatgcaatattgatatatttgataaccttaacaagtgctacagagctatatatattgttag |
40739613 |
T |
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| Q |
310 |
cctgaccttatcttaaatgatcatatatatggcccttaattt |
351 |
Q |
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| T |
40739614 |
cctgaccttatcttaaatgatcatacatatggcccttaattt |
40739655 |
T |
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