View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_7 (Length: 327)
Name: NF19143_low_7
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 6490317 - 6490021
Alignment:
| Q |
18 |
aaacggagagtggctcgattctgtaagcaatgtcatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttag |
117 |
Q |
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| T |
6490317 |
aaacggagagtggctcgattctgtaagcaatgtcatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttag |
6490218 |
T |
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| Q |
118 |
taatcaacatttttgtaagagaacaaatattaatggaaatggcttataacttataagcaaaaaaggacaaaaattagtgttaacttcacatgtagagttc |
217 |
Q |
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| T |
6490217 |
taatcaacatttttgtaagagaacaaat------ggaaatggcttataacttatcagcaaagaaggacaaaaattagtgttaacttcacatgtagagttc |
6490124 |
T |
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| Q |
218 |
cttggcatcatactctagattcttatagtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaaagtataa |
317 |
Q |
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| T |
6490123 |
cttggcatcatactctagattcttatagtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaaagtataa |
6490024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 38700368 - 38700670
Alignment:
| Q |
22 |
ggagagtggctcgattctgtaagcaatg---tcatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagt |
118 |
Q |
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| T |
38700368 |
ggagagtggctcgattctgtaagcaataatattatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagt |
38700467 |
T |
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| Q |
119 |
aatcaacatttttgtaagagaacaaatattaatggaaatggcttataacttataagcaaaaaaggacaaaaattagtgttaact--------tcacatgt |
210 |
Q |
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| T |
38700468 |
aatcaacatttttgtaagagaaca------agtggaaatggcttataacttatcaacaaagaaggacgaaaaatagtgttaacttcacataatcacatgt |
38700561 |
T |
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| Q |
211 |
agagttccttggcatcatactctagattcttatagtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaa |
310 |
Q |
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| T |
38700562 |
agagttccttggcatcatactctagattcttgtagtccaatactactaaaatccagaaaaataatttgacaaag-ttgcagaatgccttaaattatgtaa |
38700660 |
T |
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| Q |
311 |
agtataatct |
320 |
Q |
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|||||||||| |
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| T |
38700661 |
agtataatct |
38700670 |
T |
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