View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19143_low_8 (Length: 307)

Name: NF19143_low_8
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19143_low_8
NF19143_low_8
[»] chr7 (15 HSPs)
chr7 (13-136)||(4700953-4701076)
chr7 (13-134)||(4704416-4704537)
chr7 (134-273)||(4700788-4700932)
chr7 (9-135)||(4834011-4834136)
chr7 (32-134)||(4788712-4788817)
chr7 (22-119)||(4715333-4715432)
chr7 (16-76)||(4705886-4705946)
chr7 (50-178)||(4714527-4714664)
chr7 (204-273)||(4705632-4705702)
chr7 (204-261)||(4714470-4714528)
chr7 (204-273)||(4788516-4788585)
chr7 (206-273)||(4704294-4704362)
chr7 (53-119)||(4790025-4790093)
chr7 (54-119)||(4818410-4818477)
chr7 (136-178)||(4705731-4705773)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 4701076 - 4700953
Alignment:
Q  13 aatataaagtggatgcctgagtgaagacgaagacttggtgaagtctttggaatattttggtatctaagatatttaaaatagtcacggagaaagctccaaa 112  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  4701076 aatataaagtggatgcccgagtgaatacgaagacttggtgaagtctttggaatattttgccatctaagatatttaaaatagtcacagagaaagctccaaa 4700977  T
Q  113 acgtcttctttgaaatagaaaaaa 136  Q
    ||||||||||||||||| ||||||    
T  4700976 acgtcttctttgaaataaaaaaaa 4700953  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 4704537 - 4704416
Alignment:
Q  13 aatataaagtggatgcctgagtgaagacgaagacttggtgaagtctttggaatattttggtatctaagatatttaaaatagtcacggagaaagctccaaa 112  Q
    |||||||||| | |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||    
T  4704537 aatataaagttgttgctcgagtgaagacgaagacttggtgaagtctttggaatattttggtatcaaagatattttaaacagtcacggagaaagcaccaaa 4704438  T
Q  113 acgtcttctttgaaatagaaaa 134  Q
    ||||||| ||| ||||||||||    
T  4704437 acgtcttattttaaatagaaaa 4704416  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 4700932 - 4700788
Alignment:
Q  134 aaaccatttttgttaatttgtgaccacata---cggggcaagacaact--gatattgcattcctctnnnnnnnnnctaagatattaacatgtttattttt 228  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||  ||||||||||||| ||         |||||||||||||||||||||||||    
T  4700932 aaaccatttttgttaatttgtgaccacataatacggggcaagacaactaagatattgcattcccctaaaaaaaaactaagatattaacatgtttattttt 4700833  T
Q  229 ctaagaaaaattccaaatcacatgtttgggaaaataattattgct 273  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  4700832 ctaagaaaaattccaaatccaatgtttgggaaaataattattgct 4700788  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 4834136 - 4834011
Alignment:
Q  9 gaagaatataaagtggatgcctgagtgaagacgaagacttggtgaagtctttggaatattttggtatctaagatatttaaaatagtcacggagaaagctc 108  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||    
T  4834136 gaagaatataaactgcatgcccgagtgaagacgaagacttggtgaagtctttagaatattttggcatctaagatatttataacagtcatggagaaagctc 4834037  T
Q  109 caaaacgtcttctttgaaatagaaaaa 135  Q
    | ||||||||| ||| ||| |||||||    
T  4834036 c-aaacgtcttattttaaaaagaaaaa 4834011  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 4788817 - 4788712
Alignment:
Q  32 agtgaagacgaagacttggtgaagtctttggaatattttggtatctaaga---tatttaaaatagtcacggagaaagctccaaaacgtcttctttgaaat 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||  ||||| | ||||||||||||||||||||||||  |||    
T  4788817 agtgaagacgaagacttggtgaagtctttggaatgttttggtatccaagatagtatttaaagcagtcaggaagaaagctccaaaacgtcttcttttcaat 4788718  T
Q  129 agaaaa 134  Q
    ||||||    
T  4788717 agaaaa 4788712  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 4715432 - 4715333
Alignment:
Q  22 tggatgcctgagtgaagacgaagacttggtgaagtctttggaatattttggtatctaagatatttaaa--atagtcacggagaaagctccaaaacgtctt 119  Q
    |||||||  |||| |||||||||||||||||||||||| |||| ||||||| |||||||||| |||||  ||||||||| ||||||||||||||||||||    
T  4715432 tggatgctcgagtaaagacgaagacttggtgaagtcttaggaacattttggcatctaagataattaaagcatagtcacgcagaaagctccaaaacgtctt 4715333  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 4705946 - 4705886
Alignment:
Q  16 ataaagtggatgcctgagtgaagacgaagacttggtgaagtctttggaatattttggtatc 76  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4705946 ataaagtggatgctcgagtgaagacgaagacttggtgaagtctttggaatgttttggtatc 4705886  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 4714664 - 4714527
Alignment:
Q  50 gtgaagtctttggaatattttggtatctaag--atatttaaaatagtcacggagaaagctccaaaacgtcttctttgaaatagaaaa-------aaccat 140  Q
    |||||||||| |||||||||||| |||||||  | || || || |||||||||||||||||||||||||||  ||| ||||||||||         ||||    
T  4714664 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtatttggcccat 4714565  T
Q  141 ttttgttaatttgtgaccacatacggggcaagacaact 178  Q
    ||||||||| |||||||||||||| ||||| |||||||    
T  4714564 ttttgttaaattgtgaccacatacagggcatgacaact 4714527  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 4705702 - 4705632
Alignment:
Q  204 ctaagatattaacatgttta-tttttctaagaaaaattccaaatcacatgtttgggaaaataattattgct 273  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||||| |||||||||    
T  4705702 ctaagatattagcatgtttaatttttctaggaaaaattccaaattacgtgtttgggaaaatgattattgct 4705632  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 4714528 - 4714470
Alignment:
Q  204 ctaagatattaacatgttta-tttttctaagaaaaattccaaatcacatgtttgggaaa 261  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  4714528 ctaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaa 4714470  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 4788585 - 4788516
Alignment:
Q  204 ctaagatattaacatgttta-tttttctaagaaaaattccaaatcacatgtttgggaaaataattattgct 273  Q
    ||||||||||| |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  4788585 ctaagatattagcatgtttaatttttctaggaaaaat-ccaaatcacgtgtttgggaaaataattattgct 4788516  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 4704362 - 4704294
Alignment:
Q  206 aagatattaacatgttta-tttttctaagaaaaattccaaatcacatgtttgggaaaataattattgct 273  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||| ||||  |||||||||||||||||    
T  4704362 aagatattagcatgtttaatttttccaagaaaaattccaaatcacgtgttctggaaaataattattgct 4704294  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 4790093 - 4790025
Alignment:
Q  53 aagtctttggaatattttggtatctaagatatttaaa--atagtcacggagaaagctccaaaacgtctt 119  Q
    |||||||||||| ||||||| |||||||||| |||||  ||||||||| ||||||||| ||||||||||    
T  4790093 aagtctttggaacattttggcatctaagataattaaagcatagtcacgcagaaagctcgaaaacgtctt 4790025  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 4818477 - 4818410
Alignment:
Q  54 agtctttggaatattttggtatctaagatatttaaa--atagtcacggagaaagctccaaaacgtctt 119  Q
    ||||||||||| ||||||| |||||||||| ||| |  ||||||||| ||||||||||||||||||||    
T  4818477 agtctttggaacattttggcatctaagataattagagcatagtcacgcagaaagctccaaaacgtctt 4818410  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 4705773 - 4705731
Alignment:
Q  136 accatttttgttaatttgtgaccacatacggggcaagacaact 178  Q
    |||| ||||||||||||||||||||||||  ||||||||||||    
T  4705773 accaattttgttaatttgtgaccacatacaaggcaagacaact 4705731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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