View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19143_low_9 (Length: 289)
Name: NF19143_low_9
Description: NF19143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19143_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 12682136 - 12682278
Alignment:
| Q |
12 |
aattctacaaacattgatctcactcttggagagccgaaagaagaaccggaaatagaagatgtatcggctataaaagttatgccgatgaccatgcacgtgc |
111 |
Q |
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| T |
12682136 |
aattctacaaacattgatctcactcttggagagccgaaagaagaaccggaaatagaagatgtatcggcgataaaagttatgccgatgaccatgcacgtgc |
12682235 |
T |
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| Q |
112 |
caccggggatacctatgtccatgcaagtgaacaaagccttggt |
154 |
Q |
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| T |
12682236 |
caccggggatacctatgtccatgcaagtgaacaaagccttggt |
12682278 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 12682352 - 12682401
Alignment:
| Q |
222 |
agatcatctacaaaagaccgtcacacaaaagtcgagggtcgaggccgaag |
271 |
Q |
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| T |
12682352 |
agatcatctacaaaagaccgtcacacaaaagtcgagggtcgaggccgaag |
12682401 |
T |
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