View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19144_high_1 (Length: 977)

Name: NF19144_high_1
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19144_high_1
NF19144_high_1
[»] chr2 (7 HSPs)
chr2 (19-528)||(13447404-13447913)
chr2 (587-958)||(13447972-13448343)
chr2 (594-958)||(13454468-13454814)
chr2 (697-957)||(13439919-13440179)
chr2 (589-697)||(13439829-13439937)
chr2 (444-527)||(13454315-13454399)
chr2 (357-420)||(13454185-13454249)
[»] chr5 (2 HSPs)
chr5 (698-948)||(28385054-28385304)
chr5 (706-958)||(12540413-12540665)
[»] chr7 (1 HSPs)
chr7 (709-958)||(3417726-3417975)
[»] chr4 (5 HSPs)
chr4 (699-946)||(48965050-48965297)
chr4 (698-940)||(48961011-48961253)
chr4 (698-872)||(48967178-48967352)
chr4 (710-946)||(48957876-48958112)
chr4 (756-843)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (697-877)||(12641761-12641941)
[»] chr6 (1 HSPs)
chr6 (732-877)||(12590449-12590594)
[»] scaffold0536 (1 HSPs)
scaffold0536 (816-902)||(6766-6852)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 13447404 - 13447913
Alignment:
Q  19 tcctgacccaccaccgacagacgcctcaacgacgacaccaatggatcaccaacacgacaagagatccatcgaaaaaa-tacaacagtgttggtgcacaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13447404 tcctgacccaccaccgacagacgcctcaacgacgacaccaatggatcatcaacacgacaagagatccatcgaaaaaaatacaacagtgttggtgcacaga 13447503  T
Q  118 ttgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcnnnnn 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  13447504 ttgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcaaaag 13447603  T
Q  218 nnnnnnnnnnngacaggatcccacaaaatctagagatttaaagtacagaaaccagctttacaggattcttccatttcattcgactgtaaacaacagcaat 317  Q
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13447604 aaaaagaaacagacaggatcccacaaaatctagagatttaaagtacaggaaccagctttacaggattcttccatttcattcgactgtaaacaacggcaat 13447703  T
Q  318 gtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacacca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447704 gtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacacca 13447803  T
Q  418 aaaattgaatcaaaacaattaagtttaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtgg 517  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447804 aaaattgaatcaaaacaattaag-gaaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtgg 13447902  T
Q  518 caggtattgtg 528  Q
    |||||||||||    
T  13447903 caggtattgtg 13447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 587 - 958
Target Start/End: Original strand, 13447972 - 13448343
Alignment:
Q  587 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447972 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 13448071  T
Q  687 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctc 786  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13448072 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctc 13448171  T
Q  787 caaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctt 886  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448172 caaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctt 13448271  T
Q  887 tctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttat 958  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448272 tctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttat 13448343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 594 - 958
Target Start/End: Original strand, 13454468 - 13454814
Alignment:
Q  594 acttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttt 693  Q
    ||||| |||||||||||| || |||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||      
T  13454468 acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatct-- 13454565  T
Q  694 taaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactc 793  Q
                    ||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||    
T  13454566 ----------------tttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactc 13454649  T
Q  794 tcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctcc 893  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||    
T  13454650 tcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctcc 13454749  T
Q  894 gcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttat 958  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  13454750 gcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttat 13454814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 697 - 957
Target Start/End: Original strand, 13439919 - 13440179
Alignment:
Q  697 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 796  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  797 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgca 896  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| |||||||| ||||||| ||||||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgca 13440118  T
Q  897 acaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgtta 957  Q
    |||||| || |||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  13440119 acaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtgtta 13440179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 589 - 697
Target Start/End: Original strand, 13439829 - 13439937
Alignment:
Q  589 ttcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaa 688  Q
    |||||||||| |||||||||| | || || ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| ||||||||||    
T  13439829 ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa 13439928  T
Q  689 tcttttaag 697  Q
    |||||||||    
T  13439929 tcttttaag 13439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 444 - 527
Target Start/End: Original strand, 13454315 - 13454399
Alignment:
Q  444 aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgt 527  Q
    ||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||||||||||||||||||||||| |||| ||||||    
T  13454315 aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgt 13454399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 13454185 - 13454249
Alignment:
Q  357 ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa 420  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||| |||||    
T  13454185 ttgaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa 13454249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 7e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 698 - 948
Target Start/End: Original strand, 28385054 - 28385304
Alignment:
Q  698 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 797  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  798 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaa 897  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||||||||||||| ||     
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctcaccaacttctttctctccccat 28385253  T
Q  898 caccactcgtacaccattctgttgcaccgacttcaactccaattcctcgga 948  Q
     |||| | ||||||||||| ||| |||| ||||| |||||||||| |||||    
T  28385254 taccatttgtacaccattccgttacacctacttccactccaattcttcgga 28385304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 706 - 958
Target Start/End: Original strand, 12540413 - 12540665
Alignment:
Q  706 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 805  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  806 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaacaccactc 905  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||  || ||||||||||||||| ||  |||| |     
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccattt 12540612  T
Q  906 gtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttat 958  Q
    |||||||||||||||||||| ||||| ||||||||||||||||  ||||||||    
T  12540613 gtacaccattctgttgcacctacttctactccaattcctcggacctgtgttat 12540665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 709 - 958
Target Start/End: Complemental strand, 3417975 - 3417726
Alignment:
Q  709 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 808  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  809 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgta 908  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  |||||||||||| ||||||||||||||| ||| ||||   | |    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgca 3417776  T
Q  909 caccattctgttgcaccgacttcaactccaattcctcggaattgtgttat 958  Q
    | ||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  3417775 cgccattctgttgcacctacttccactccaattcctcggacttgtgttat 3417726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 699 - 946
Target Start/End: Original strand, 48965050 - 48965297
Alignment:
Q  699 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 798  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  799 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaac 898  Q
    || |    || || || |||||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||| | ||||| ||| ||  |||     
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaa 48965249  T
Q  899 accactcgtacaccattctgttgcaccgacttcaactccaattcctcg 946  Q
    |||| ||  |||||||||||||||||| ||||| |||||||| |||||    
T  48965250 accagtcaaacaccattctgttgcaccaacttccactccaatccctcg 48965297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 698 - 940
Target Start/End: Original strand, 48961011 - 48961253
Alignment:
Q  698 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 797  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  798 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaa 897  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||  ||||| || | |  | ||| ||||||||  |||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgttgatcaccttatttctctcttcaa 48961210  T
Q  898 caccactcgtacaccattctgttgcaccgacttcaactccaat 940  Q
     ||||  |  |||||||||||||||||| ||||||| ||||||    
T  48961211 taccatccacacaccattctgttgcaccaacttcaattccaat 48961253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 698 - 872
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  698 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 797  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  798 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 872  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 710 - 946
Target Start/End: Original strand, 48957876 - 48958112
Alignment:
Q  710 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 809  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  810 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtac 909  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| |||||| | ||||| | ||||| | ||||| ||| |||  |   ||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacac 48958075  T
Q  910 accattctgttgcaccgacttcaactccaattcctcg 946  Q
    |||| ||||||||||| || || || |||||||||||    
T  48958076 accactctgttgcaccaacctccaccccaattcctcg 48958112  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 756 - 843
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  756 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 843  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

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Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 697 - 877
Target Start/End: Complemental strand, 12641941 - 12641761
Alignment:
Q  697 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 796  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  797 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcac 877  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| |||| ||| |||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactatgtctactcac 12641761  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 732 - 877
Target Start/End: Complemental strand, 12590594 - 12590449
Alignment:
Q  732 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 831  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  832 cgtccatcaatctccttacagccttctctatgctatctctgctcac 877  Q
    | ||||||||||| || ||||| |||| |||||||||||| |||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctctactcac 12590449  T

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Target: scaffold0536 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 902
Target Start/End: Complemental strand, 6852 - 6766
Alignment:
Q  816 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcaacacca 902  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| || | ||| | ||||| ||||||| ||| ||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaatacca 6766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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