View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_high_12 (Length: 256)
Name: NF19144_high_12
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_high_12 |
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| [»] scaffold0343 (1 HSPs) |
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Alignment Details
Target: scaffold0343 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 5684 - 5472
Alignment:
| Q |
16 |
atgataaaatataaaggtttacaaatacctagtgactcgaaatgaagtggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttt |
115 |
Q |
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| T |
5684 |
atgagaaaatataaaggtttacaaatacctagtgactcgaaatgaagtggtaaaatttatttcatttcaaataggcacttaatgctacattttacacttt |
5585 |
T |
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| Q |
116 |
tcacatgaacacggaaaactgatacattaaatacacaaacaactaatttccttacgtaaggggaggacttccttcgcacttttgattttatacaattaca |
215 |
Q |
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|||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
5584 |
tcacatgaacacagaaaacacatacattaaatacactaacaactaatttccttacgtaaggggaggacttccttcgcacctttgattttagacaattaca |
5485 |
T |
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| Q |
216 |
ttattctttttct |
228 |
Q |
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||||||||||||| |
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| T |
5484 |
ttattctttttct |
5472 |
T |
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