View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_high_15 (Length: 238)
Name: NF19144_high_15
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 36300431 - 36300208
Alignment:
| Q |
15 |
cattttgtactaaatagcgtatagcgtcactatatagctgttattttacaacactttaaaatttacatatatttcccaactatattagcgaccaaaatta |
114 |
Q |
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| T |
36300431 |
cattttgtactaaatagcgtatagcgtcactatatagctgttatttaacaacactttaaaatttacatatatttcccaactatattagcgaccaaaatta |
36300332 |
T |
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| Q |
115 |
tcaagatacttcattacttcattattatcaaacacttgttgacaatttaaaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaaagc |
214 |
Q |
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| T |
36300331 |
tcaagatacttcattacttcattattatcaaacacttgttgacgatttaaaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaaagc |
36300232 |
T |
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| Q |
215 |
aatgtatacacactgatatacacc |
238 |
Q |
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| T |
36300231 |
aatgtatacacactgatatacacc |
36300208 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 48298830 - 48298891
Alignment:
| Q |
164 |
aaatagttttcctgtggtgttatttgaatcacttaacaaaccactgaaagcaatgtatacac |
225 |
Q |
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| T |
48298830 |
aaatagttttcctgtggagttatttgaatcacttgacagattactgaatgcaatttatacac |
48298891 |
T |
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