View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_high_6 (Length: 363)
Name: NF19144_high_6
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 25792196 - 25792532
Alignment:
| Q |
19 |
actgtattcatatgctctacatattatagggactaatttataacaatgaggaccaatagtaaacattccaatgtcttagggactaaaaccaaaagaaact |
118 |
Q |
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| T |
25792196 |
actgtattcatatgctctacatattatagggactaatttataacaatgaggaccaatagtaaacattccaatgtcttagggactaaaaccaaaagaaact |
25792295 |
T |
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| Q |
119 |
ttttgcagggactaaaggaaaagactagtgtatttgcacaaaggaaaaagatatttaaaacaaatatttatacttgcatgtaagttaatgttaactttta |
218 |
Q |
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| T |
25792296 |
ttttgcagggactaaaggaaaagactagtgtatttgcacaaaggaaaaagatatttaaaacaaatatttatacttgcatgtaagttaatgttaac-ttta |
25792394 |
T |
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| Q |
219 |
tattattcacggtgaactttactgctttaaaaacttgcattctttatttaatttgaaaaatgtttaattgaggtgtatatacatcttatgagagaagagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25792395 |
tattattcacggtgaactttactgctttaaaaacttgcattctttatttaatttgaaaaatgtttaattgaggtgtatatacatcttaggagagaagagt |
25792494 |
T |
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| Q |
319 |
acgagagtaatatgatagatttgataaattgatgatgt |
356 |
Q |
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| T |
25792495 |
acgagagtaatatgataaatttgataaattgatgatgt |
25792532 |
T |
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