View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_14 (Length: 280)
Name: NF19144_low_14
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 42800115 - 42800221
Alignment:
| Q |
19 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaagattgttctatctcaatacccatattaattgattaggcctttagttttc |
118 |
Q |
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| T |
42800115 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaagattgttctatctcaatacccatattaattgattaggcctttagttttc |
42800214 |
T |
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| Q |
119 |
tgttagt |
125 |
Q |
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||||||| |
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| T |
42800215 |
tgttagt |
42800221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 42790575 - 42790685
Alignment:
| Q |
19 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaagattgttctatctcaatacccatattaattg----attaggcctttagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42790575 |
gagttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaagattgttctatctcaatacccatattaattgattaattaggcctttagt |
42790674 |
T |
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| Q |
115 |
tttctgttagt |
125 |
Q |
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||||||||||| |
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| T |
42790675 |
tttctgttagt |
42790685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 42790766 - 42790842
Alignment:
| Q |
198 |
tcaatgagtttgtgaaagaaaaccccgctctatatatagactttgaggcaggtacatgaaaaatatcattcttatca |
274 |
Q |
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| T |
42790766 |
tcaatgagtttgtcaaagaaaaccccgctctatatatagactttgaggcaggtacatgaaaaatatcattcttatca |
42790842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 42800302 - 42800348
Alignment:
| Q |
198 |
tcaatgagtttgtgaaagaaaaccccgctctatatatagactttgag |
244 |
Q |
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| T |
42800302 |
tcaatgagtttgtcaaagaaaaccccgctctatatatagactttgag |
42800348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 34568311 - 34568359
Alignment:
| Q |
22 |
ttttctccatgagtgtcagaaattgcaatgtttgaaagttgtacacaag |
70 |
Q |
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|||||||||||||| |||||| ||||||| |||||||||| ||||||| |
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| T |
34568311 |
ttttctccatgagtttcagaagttgcaatatttgaaagttcaacacaag |
34568359 |
T |
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