View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_16 (Length: 260)
Name: NF19144_low_16
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 47080591 - 47080837
Alignment:
| Q |
14 |
cacagacacggtggaagaatcattttgaaccctgccataaataagtggaagcctatatttattgcagctagtgtttgtatatattgctcccccgcaaaca |
113 |
Q |
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| T |
47080591 |
cacagacacggtggaagaatcattttgaaccctgccataaataagtggaagcctatatttattgcagctagtgtttgtatatattgctcccccgcaaaca |
47080690 |
T |
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| Q |
114 |
caatcttcttggcaagcctgctcacaagttttcatgttcatcacaggtataacagaatatggaatatcaccccaagacatatttttaaagttagtataat |
213 |
Q |
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| T |
47080691 |
caatcttcttggcaagcctgctcacaagttttcatgttcatcacaggtataacagaatatggaatatcaccccaagacatattcttaaagttagtataat |
47080790 |
T |
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| Q |
214 |
tatataacgccgtgccttcgctgctttcacagtcatctttgctatgt |
260 |
Q |
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| T |
47080791 |
tatataacgccgtgccttcgctgctttcacagtcatctttgctatgt |
47080837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 47061150 - 47060912
Alignment:
| Q |
27 |
gaagaatcattttgaaccctgccataaataagtggaagcctatatttattgcagctagtgtttgtatatattgctcccccgcaaacacaatcttcttggc |
126 |
Q |
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| T |
47061150 |
gaagaatcattttgaaacttgccgtgtataagtggaagcctatatttattgcagctgccgttggtatatattgctcccccacaaacacaatcttgtcggc |
47061051 |
T |
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| Q |
127 |
aagcctgctcacaagttttcatgt---tcatcacaggtataacagaatatggaatatcaccccaagacatatttttaaagttagtataattatataacgc |
223 |
Q |
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| T |
47061050 |
aagccttctcacaagtatccatatcaatcaacacgggtataacagaatatggaacatccccccaatgcatattctcaaagtgagtaaaattatacaacaa |
47060951 |
T |
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| Q |
224 |
cgt---gccttcgctgctttcacagtcatctttgctatg |
259 |
Q |
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| T |
47060950 |
cgttcggtcttcaatgctttcacagtcatctttgctatg |
47060912 |
T |
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