View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19144_low_17 (Length: 256)
Name: NF19144_low_17
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26003384 - 26003615
Alignment:
| Q |
1 |
ggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26003384 |
ggagcaatagacaaggatccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatcatcaaact |
26003483 |
T |
|
| Q |
101 |
acaaaactacatttgaagtttcattaaaacaaacacagacaactaacacgacaccagttataatttagtaaaatgaatgtaattacatgttcagtgcccg |
200 |
Q |
| |
|
||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26003484 |
acagaactacgtttgaagtttcattaatacaaacacagacgactaacacgacaccag-tataatttagtaaaatgaatgtaattacatgttcagtgcccg |
26003582 |
T |
|
| Q |
201 |
atatcaatgtatgttggacaccagagacgtctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26003583 |
atatcaatgtatgttggacaccagagacgtctt |
26003615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 26018121 - 26018238
Alignment:
| Q |
2 |
gagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaacta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
26018121 |
gagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgataatcaaatta |
26018220 |
T |
|
| Q |
102 |
caaaactacatttgaagt |
119 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26018221 |
caaaactacatttgaagt |
26018238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University