View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_19 (Length: 255)
Name: NF19144_low_19
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 26003407 - 26003171
Alignment:
| Q |
2 |
ggaaggatccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatc |
101 |
Q |
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| T |
26003407 |
ggaaggatccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatc |
26003308 |
T |
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| Q |
102 |
agttactaagttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttccca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26003307 |
agttactaagttaagactaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagtcctataccttttccca |
26003208 |
T |
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| Q |
202 |
taatccatctgaagctaagattaaaaagtcatgatga |
238 |
Q |
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| T |
26003207 |
taatccatctgaagctaagattaacaagtcatgatga |
26003171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26018144 - 26017917
Alignment:
| Q |
1 |
tggaaggatccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaat |
100 |
Q |
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|||||||||||||||||||||||| || |||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26018144 |
tggaaggatccttgtctattgctctctacacataaaggaccagcaagatctacagcttcttgattactaacctgaacaagattgaaaagagaaactaaat |
26018045 |
T |
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| Q |
101 |
cagttactaagttaagactaaactatagttga--actgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttc |
198 |
Q |
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| T |
26018044 |
cagttactcgtttaatagt--actatagttgagcaaattgatctcatga----------aaagaacattgcaattaattgatgaagtcctataccttttc |
26017957 |
T |
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| Q |
199 |
ccataatccatctgaagctaagattaaaaagtcatgatga |
238 |
Q |
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| T |
26017956 |
ccataatccatctgaagctaagattaaaaagtcatgatga |
26017917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 30374471 - 30374427
Alignment:
| Q |
190 |
taccttttcccataatccatctgaagctaagattaaaaagtcatg |
234 |
Q |
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|||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatg |
30374427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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