View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_2 (Length: 692)
Name: NF19144_low_2
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Complemental strand, 5024415 - 5023750
Alignment:
| Q |
17 |
agaaaacaacaacaactccggcgttatggcagagactaggagtccaagactacaaaagaagttcggtttggagagacgttccccaccaaccagcccaaaa |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024415 |
agaaaacaacaccaactccggcgttatggcagagactaggagtccaagactacaaaagaagttcggtttggagagacgttccccaccaaccagcccaaaa |
5024316 |
T |
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| Q |
117 |
tcagatatcagcagtaacagaagacaacaaaataggcaatcaccggatctgtctttgccgagcaaaacatccagacaaaaattgtctcctttgaaggaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024315 |
tcagatatcagcagtaacagaagacaacaaaataggcaatcaacggatctgtctttgccgagcaaaacatccagacaaaaattgtctcctttgaaggaaa |
5024216 |
T |
|
| Q |
217 |
gaaatgatcagaatgcagaacaagacttgagcaaggaaagctttatggttgaaacaatggttactgcagaacaacccagtcccgtgtctgttcttgatgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024215 |
gaaatgatcagaatgcagaacaagacttgagcaaggaaagttttatggttgaaacaatggttactgcagaacaacccagtcccgtgtctgttcttgatgc |
5024116 |
T |
|
| Q |
317 |
ttcattctatagagaagacccaccttctccggttaaaaggaaatcagacatatcaaaagatttaggtatatttcacacttcttttctaagcatcatagat |
416 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024115 |
ttcattctatagagaagacccaccttccccggttaaaaggaaatcagacatatcaaaagatttaggtatatttcacacttcttttctaagcatcatagat |
5024016 |
T |
|
| Q |
417 |
tgaacttcaaatggtctaaaatcatctgtcatatgcatcacttcatcaattacattttttcttccatttacttatgattcccttcaaatttatttcgaca |
516 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024015 |
tgaatgtcaaatggtctaaaatcatctgtcatatgcatcacttcatcaattacattttttcttccatttacttatgattcccttcaaatttatttcgaca |
5023916 |
T |
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| Q |
517 |
gatgaagtactgaacacttatgataatagtgaggaggactcagaaggtctttctctttcatccaacactaacacaaaagtcaactttggcaatgaaacca |
616 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5023915 |
gatgaagtactgaacacttacgataatagtgaggaggactcagaaggtctttctctttcatccaacactaacacaaaagtcaactttggcaatggaacca |
5023816 |
T |
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| Q |
617 |
ttgatattgacttgatcactgataatttggttcaaattcttcaacaatttgaccacaatgatgatg |
682 |
Q |
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| T |
5023815 |
ttgatattgacttgatcactgataatttggttcaaattcttcaacaatttgaccacaatgatgatg |
5023750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 4558412 - 4558322
Alignment:
| Q |
294 |
agtcccgtgtctgttcttgatgcttcattctatagagaagacccaccttctccggttaaaaggaaatcagacatatcaaaagatttaggta |
384 |
Q |
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||||| || ||||||||||||||| ||||||||| ||||| ||||| ||||| || |||| |||||| || | |||||| ||||||||| |
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| T |
4558412 |
agtcctgtatctgttcttgatgctgcattctataaggaagatccaccatctccagtgaaaacgaaatcgaacgtttcaaaaaatttaggta |
4558322 |
T |
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