View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_20 (Length: 250)
Name: NF19144_low_20
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36300162 - 36299921
Alignment:
| Q |
1 |
aaaaaactcaacaacaaggaatgtgactcatcacttagtagatctaagtggaatttatacagcaaatttgcacaaaaattgtattacagaatgtattgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36300162 |
aaaaaactcaacaacaaggaatgtgactcatcacttagtagatctaagtggagtttatacagcaaatttgcacaaaaattgtattacaaaatgtattgtt |
36300063 |
T |
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| Q |
101 |
agaattcatctttgaatagcaaagatgatctcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300062 |
agaattcatctttgaatagaaaagatgatctcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttg |
36299963 |
T |
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| Q |
201 |
tatccaaggcagcttccatgaaacaaatcttatcttcttatc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36299962 |
tatccaaggcagcttccatgaaacaaatcttatcttcttatc |
36299921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 36301600 - 36301522
Alignment:
| Q |
153 |
cttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaatctt |
231 |
Q |
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| T |
36301600 |
cttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatctt |
36301522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 36297387 - 36297287
Alignment:
| Q |
131 |
tcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaatct |
230 |
Q |
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| T |
36297387 |
tcaaaatagcctcacataaacccttgtagtatataatcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaatct |
36297288 |
T |
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| Q |
231 |
t |
231 |
Q |
| |
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| |
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|
| T |
36297287 |
t |
36297287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 36301745 - 36301696
Alignment:
| Q |
12 |
caacaaggaatgtgactcatcacttagtagatctaagtggaatttataca |
61 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
36301745 |
caacaaggaatgagattcatcacttagtagatctaagtgaaatttataca |
36301696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 48299087 - 48299188
Alignment:
| Q |
130 |
ctcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaatc |
229 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
48299087 |
ctcaatattgcctcacacatgcccttatagcataaaatcagatggccactatttggaacttcatgatattgtatccaaggtagctgccatgaaacaaatc |
48299186 |
T |
|
| Q |
230 |
tt |
231 |
Q |
| |
|
|| |
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|
| T |
48299187 |
tt |
48299188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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