View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_25 (Length: 211)
Name: NF19144_low_25
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 36766443 - 36766267
Alignment:
| Q |
15 |
acatcagaatctattttcagtacctttctcaaattttctgtttcaatttgctcgtccttttttatgtgtattttacataaaaggtaacccataaacttaa |
114 |
Q |
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| T |
36766443 |
acatcagaatctattttcagtacctttctcaaattttctgtttcaatttgctcgtccttttttatgtgtattttacataaaaggtaacccataaacttaa |
36766344 |
T |
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| Q |
115 |
agccaccacaagctcatgcatgacaaggcattcttatctacacacatagcctcggagtaggacaagtttgaaatgttct |
193 |
Q |
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| T |
36766343 |
agccaccacaagctcatgcatgacaaggcattcttatct--tcacatagcctccgagtaggacaagtttgaaatgttct |
36766267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 36790793 - 36790750
Alignment:
| Q |
116 |
gccaccacaagctcatgcatgacaaggcattcttatctacacac |
159 |
Q |
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| T |
36790793 |
gccaccacaagctcatgcatgacaaggaattcctatcttcacac |
36790750 |
T |
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