View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19144_low_3 (Length: 483)

Name: NF19144_low_3
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19144_low_3
NF19144_low_3
[»] chr7 (11 HSPs)
chr7 (16-472)||(24001529-24001985)
chr7 (19-472)||(24009716-24010169)
chr7 (357-433)||(24035422-24035498)
chr7 (355-427)||(23993207-23993279)
chr7 (26-128)||(23992893-23992995)
chr7 (16-48)||(24035081-24035113)
chr7 (357-408)||(15440723-15440774)
chr7 (357-408)||(15508420-15508471)
chr7 (89-136)||(24035154-24035201)
chr7 (162-199)||(24035218-24035255)
chr7 (380-432)||(26256457-26256509)
[»] chr5 (1 HSPs)
chr5 (88-132)||(23086145-23086189)
[»] chr2 (1 HSPs)
chr2 (89-121)||(14514294-14514326)


Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 24001529 - 24001985
Alignment:
Q  16 catcttttgctcaaaaatccatccatcaccgttgatagcaacgatctctaccgtttgagtagccattgcatggttgttggttcatgtaatggattgatct 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24001529 catcttttgctcaaagatccatccatcaccgttgatagcaacgatctctaccgtttgagtagccattgtatggttgttggttcatgtaatggattgatct 24001628  T
Q  116 gcttgcttttccattctgaaataacttcaccaacagttacatatttaaagagttggtttcgtttctggaaccctgccaccaggataagatctgaaatatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001629 gcttgcttttccattctgaaataacttcaccaacagttacatatttaaagagttggtttcgtttctggaaccctgccaccaggataagatctgaaatatc 24001728  T
Q  216 agggttgctacgcaatatcatccctcatgacgaaattggtattcacacttttttatgccgttttaagttcacttttggttatgaatctttgtcaaaaact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001729 agggttgctacgcaatatcatccctcatgacgaaattggtattcacacttttttatgccgttttaagttcacttttggttatgaatctttgtcaaaaact 24001828  T
Q  316 tacaaggttgtagcttttcgtgttaaaaaggacgaaggtgaggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgt 415  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001829 tacaaggttgtagcttttcgtgttaaaaagaacgaaggtgaggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgt 24001928  T
Q  416 ttcctcttaatttgttgcctcgtagacgtggacgaggacaatgctgccttaatgatg 472  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24001929 ttcctcttaatttgttgcctcgtagacgtggacgaggaccatgctgccttaatgatg 24001985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 24009716 - 24010169
Alignment:
Q  19 cttttgctcaaaaatccatccatcaccgttgatagcaacgatctctaccgtttgagtagccattgcatggttgttggttcatgtaatggattgatctgct 118  Q
    ||||||||||||||||||||||||| | | ||| ||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24009716 cttttgctcaaaaatccatccatcagcctggatggcaacgatctctcaagtttgagtaaccattgcatggttgttggttcatgtaatggattgatctgct 24009815  T
Q  119 tgcttttccattctgaaataacttcaccaacagttacatatttaaagagttggtttcgtttctggaaccctgccaccaggataagatctgaaatatcagg 218  Q
    |||||| |||| ||||||  ||||||||||| |||| | |||| |||| |||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  24009816 tgctttaccatactgaaagtacttcaccaactgttaaacatttcaagacttggtttcgtttctggaaccctgccaccaggatacgatctaatatattagg 24009915  T
Q  219 gttgctacgcaatatcatccctcatgacgaaattggtattcacacttttttatgccgttttaagttcacttttggttatgaatctttgtcaaaaacttac 318  Q
     | ||||    |||  ||||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||     
T  24009916 ttggctaacttatagaatccctcgtgacgacattgatatgctcacttttttatgccgttttaagttcacttttggttatgaatctttatcgaaaacttat 24010015  T
Q  319 aaggttgtagcttttcgtgttaaaaaggacgaaggtgaggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgtttc 418  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||||| |||| |||    
T  24010016 aaggttgtagcttttcgtattataaagaacgaaggtgaggttaaagttttcagtctaggagataattgttggagagatattcagagctttcttgtgcttc 24010115  T
Q  419 ctcttaatttgttgcctcgtagacgtggacgaggacaatgctgccttaatgatg 472  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  24010116 ctcttaatttgttgcctcctagacgtagacgaggaccatgctgccttaatgatg 24010169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 24035422 - 24035498
Alignment:
Q  357 ggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgtttcctcttaatttgttgc 433  Q
    ||||||| |||||| ||||||   ||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  24035422 ggttaaaattttcaatcttggtgataattgttggagaaatattcagagctttcctatatttcctcttaattggttgc 24035498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 23993207 - 23993279
Alignment:
Q  355 gaggttaaagttttcagtcttggaagtaattgttggagaaatattcagagctttcctgtgtttcctcttaatt 427  Q
    |||||| |||| |||||||| || | |||||||||||||||||||||||||||| ||| | ||||||||||||    
T  23993207 gaggttgaagtcttcagtctaggtaataattgttggagaaatattcagagctttactgcggttcctcttaatt 23993279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 23992893 - 23992995
Alignment:
Q  26 tcaaaaatccatccatcaccgttgatagcaacgatctctaccgtttgagtagccattgcatggttgttggttcatgtaatggattgatctgcttgctttt 125  Q
    ||||||||||||||||||| ||| | |||  | ||||| | |||||||  | ||||||||| ||||||||||| ||||| |||||  |||||||| ||||    
T  23992893 tcaaaaatccatccatcactgtttacagccgcaatctccatcgtttgaagaaccattgcattgttgttggttcttgtaacggattactctgcttggtttt 23992992  T
Q  126 cca 128  Q
    |||    
T  23992993 cca 23992995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 24035081 - 24035113
Alignment:
Q  16 catcttttgctcaaaaatccatccatcaccgtt 48  Q
    |||||||||||||||||||||||||||||||||    
T  24035081 catcttttgctcaaaaatccatccatcaccgtt 24035113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 15440723 - 15440774
Alignment:
Q  357 ggttaaagttttcagtcttggaagtaattgttggagaaatattcagagcttt 408  Q
    ||||||||||||| ||||||| | ||||||||||||||||||  ||||||||    
T  15440723 ggttaaagttttccgtcttggtaataattgttggagaaatatagagagcttt 15440774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 15508420 - 15508471
Alignment:
Q  357 ggttaaagttttcagtcttggaagtaattgttggagaaatattcagagcttt 408  Q
    ||||||||||||||||||||  | ||||||||||||||||||  ||||||||    
T  15508420 ggttaaagttttcagtcttgttaataattgttggagaaatatagagagcttt 15508471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 24035154 - 24035201
Alignment:
Q  89 ttgttggttcatgtaatggattgatctgcttgcttttccattctgaaa 136  Q
    |||||||||| |||||||||||| | |||||||||||| |||||||||    
T  24035154 ttgttggttcctgtaatggattgctttgcttgcttttcaattctgaaa 24035201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 24035218 - 24035255
Alignment:
Q  162 aaagagttggtttcgtttctggaaccctgccaccagga 199  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  24035218 aaagaattggttacgtttctggaaccctgccaccagga 24035255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 26256457 - 26256509
Alignment:
Q  380 gtaattgttggagaaatattcagagctttcctgtgtttcctcttaatttgttg 432  Q
    |||||||||||||||| ||||| || ||||| ||| |||||||||||| ||||    
T  26256457 gtaattgttggagaaacattcaaagttttccagtgattcctcttaattggttg 26256509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 23086145 - 23086189
Alignment:
Q  88 gttgttggttcatgtaatggattgatctgcttgcttttccattct 132  Q
    ||||||||||| || ||||||||| | ||||||||||||||||||    
T  23086145 gttgttggttcctgcaatggattgctttgcttgcttttccattct 23086189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 14514294 - 14514326
Alignment:
Q  89 ttgttggttcatgtaatggattgatctgcttgc 121  Q
    ||||||||||||| |||||||||||||||||||    
T  14514294 ttgttggttcatgcaatggattgatctgcttgc 14514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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