View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_4 (Length: 447)
Name: NF19144_low_4
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1180974 - 1180754
Alignment:
| Q |
18 |
aaggtagtggtgcatagctagcactaaataatggaaaccaattttgggttagttgcaggctctcacaacaagaatgaattcattatcatacgtcaagatg |
117 |
Q |
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| T |
1180974 |
aaggtagtggtgcatagctagcactaaataatggaaaccaattttgggttagttgcaggctctcacaacaagaatgaattcattatcatacgtcaagatg |
1180875 |
T |
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| Q |
118 |
gtgactatgctgtaagtaataccaagtttttatatatcatctctttgcatatatacatagactagtacatcaaatacacaaatgaatttaactttcaatt |
217 |
Q |
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| T |
1180874 |
gtgactatgctgtaagtaataccaagtttatatatatcatctc-ttgcatatatacatagactagtacatcaaatacacaaatgaatttaactttcaatt |
1180776 |
T |
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| Q |
218 |
ttggcaaaaatatttttgatgt |
239 |
Q |
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| T |
1180775 |
ttggcaaaaatatttttgatgt |
1180754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 266 - 445
Target Start/End: Complemental strand, 1180737 - 1180553
Alignment:
| Q |
266 |
tcaatgttggcatcgatctaactttgaat------attatagacaatttttatgtaaattttcttcattaattcannnnnnnncttctaatattacagtg |
359 |
Q |
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| T |
1180737 |
tcaatgttggcatcgatctaactttgaatgacaaaattatagacaatttttatgtaaattttcttcattaattcattttttt-cttctaatattacagtg |
1180639 |
T |
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| Q |
360 |
aaatacattgttatttaactaaatgcttatatacagttttagtctcttatttttcaaattcacaatttcaatcctcctatgctact |
445 |
Q |
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| T |
1180638 |
aaatacattgttatttaactaaatgcttatatacagttttagtctcttatttttcaaattcacaatttcaattctcctatgttact |
1180553 |
T |
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