View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_5 (Length: 417)
Name: NF19144_low_5
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 23218428 - 23218027
Alignment:
| Q |
16 |
caatatgaacttgatgggaaagcatgtgcagctgttgggcagagcagtctcatggctctctatgatatcatgtttagtcaggtaaacatgatattaagct |
115 |
Q |
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| T |
23218428 |
caatatgaacttgatgggaaagcatgcgcagctgttgggcagagcagtctcatggctctctatgatatcatgtttagtcaggtaaacataatattaagct |
23218329 |
T |
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| Q |
116 |
tctaattcaatatgtcgcgaatcttgtatatgtgtatatttctttgacatatgaactatttttctattaatcgaactgattccttcttattgatgtgatt |
215 |
Q |
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| T |
23218328 |
tctaattcaatatgtcgcgaatcttgtatatgtgtgtatttctttgacatatgaactatttttctattaatcgaactgattccttcttattgatgtgatt |
23218229 |
T |
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| Q |
216 |
ttccgtgatgcagcttgatgtgacttcatcacaacttcttgtgaatgatggattttttcgggatgcagatttcagaaaacaactaactgacactgtgcac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23218228 |
ttccgtgatgcagcttgatgtgacttcatcacaacttcttgtgaatgatggattttttcgggatgcagatttcagaaaacaactaactgacactgtgcac |
23218129 |
T |
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| Q |
316 |
tcgttattagagttaagggtcatccccattttcaatgaaaatgatgctgtgagtactaggaaggcaccatatgaggtatgcttcttttccttcaactata |
415 |
Q |
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| T |
23218128 |
tcgttattagagttaagggtcatccccattttcaatgaaaatgatgctgtgagtactaggaaggcaccatatgaggtatgcttcttttccttcaactata |
23218029 |
T |
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| Q |
416 |
tt |
417 |
Q |
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|| |
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| T |
23218028 |
tt |
23218027 |
T |
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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 6467591 - 6467762
Alignment:
| Q |
223 |
atgcagcttgatgtgacttcatcacaacttcttgtgaatgatggattttttcgggatgcagatttcagaaaacaactaactgacactgtgcactcgttat |
322 |
Q |
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|||||||| ||||||||||| || ||||| || ||||||||||| |||||| ||||| ||| |||||||||||||||| | ||||| | |||||||| |
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| T |
6467591 |
atgcagctagatgtgacttcctcccaactactagtgaatgatgggttttttagggattcaggtttcagaaaacaactatccgacacaattacctcgttat |
6467690 |
T |
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| Q |
323 |
tagagttaagggtcatccccattttcaatgaaaatgatgctgtgagtactaggaaggcaccatatgaggtat |
394 |
Q |
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| T |
6467691 |
tagaatcgaaggtcatccccattttcaatgaaaatgatgctgttagtactaggaaggcgccatatgaggtat |
6467762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 6467430 - 6467503
Alignment:
| Q |
25 |
cttgatgggaaagcatgtgcagctgttgggcagagcagtctcatggctctctatgatatcatgtttagtcaggt |
98 |
Q |
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| T |
6467430 |
cttgatggaaaagcatgtgcggctgttgggcagagtagtctcatggctctgtatgatactatgtttagccaggt |
6467503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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