View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19144_low_6 (Length: 416)
Name: NF19144_low_6
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19144_low_6 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 25813188 - 25812798
Alignment:
| Q |
12 |
atgaattgaagtatttgacaatattgaaatgtctaaattatgtagtacatgcagataaattcggtatttgatttgatgagagtgtcttcaaacgtcgcaa |
111 |
Q |
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| T |
25813188 |
atgaattgaagtatttgacaatattgaaatgtctaaattatgtggtacatacagataaattcgatatttgatttgatgagaatgttttcaaacgtcgcaa |
25813089 |
T |
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| Q |
112 |
agtatnnnnnnnn-ctctgaa-gatacttagagaatcacatgcacttaacctccctatatgattaaagtcttgtaagttgaaacagagnnnnnnnn-ggg |
208 |
Q |
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| T |
25813088 |
agaataaaaaaaaactctgaaagatacatagagaatcacatgcacttaacgtccctatatgattaaagtcttgtaagttgaaacagagaaaaaaaaaggg |
25812989 |
T |
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| Q |
209 |
aataaattccatccatttcaaaattagtagttatgtatttgtatcttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggt |
308 |
Q |
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| T |
25812988 |
aataaattccatccaattcaaaattagtagttctgtatttgtatcttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggt |
25812889 |
T |
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| Q |
309 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagttagaagaattgattcttcatttttggatagatatt |
399 |
Q |
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| T |
25812888 |
ctttatacatttgtatattcaccaacaaagaatatgccaatgactcatgatgaagtcagaagaattgattcttcaattttggatagatatt |
25812798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 25800122 - 25799983
Alignment:
| Q |
253 |
cttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggtctttatacatttgtatattcaccaacaaagaatatgccaatgac |
352 |
Q |
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| T |
25800122 |
cttctaatcttgaagtccatttgattctttgaagaaattctacctcgatttaaggtcca-attcatttgtatcttcaccagcaatga------caatgac |
25800030 |
T |
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| Q |
353 |
tcatgatgaagttagaagaattgattcttcatttttggatagatatt |
399 |
Q |
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| T |
25800029 |
ccatgatgaagtttgaagaactgattcttcatttttggatagatatt |
25799983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 114548 - 114687
Alignment:
| Q |
253 |
cttctaatctttaagtccatttggttctagaaataaaccctaccttgatttaaggtctttatacatttgtatattcaccaacaaagaatatgccaatgac |
352 |
Q |
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| T |
114548 |
cttctaatcttgaagtccatttgattctttgaagaaattctacctcgatttaaggtcca-attcatttgtatcttcaccagcaatga------caatgac |
114640 |
T |
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| Q |
353 |
tcatgatgaagttagaagaattgattcttcatttttggatagatatt |
399 |
Q |
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| T |
114641 |
ccatgatgaagtttgaagaactgattcttcatttttggatagatatt |
114687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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