View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19144_low_7 (Length: 375)

Name: NF19144_low_7
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19144_low_7
NF19144_low_7
[»] chr1 (2 HSPs)
chr1 (1-359)||(3016715-3017074)
chr1 (1-359)||(3032455-3032810)
[»] chr3 (1 HSPs)
chr3 (64-117)||(48969974-48970027)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 3017074 - 3016715
Alignment:
Q  1 agatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017074 agatccagcattaccacacataacctgacttttgcaactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaa 3016975  T
Q  101 aagaagatacaattaatctcaagacctcctgnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataatagaatagaattcaa 200  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3016974 aagaagatacaattaatctcaagacctcctgaaagaaaatgacaccatataactcaacagacataacttgttaagaacatgataatagaatagaattcaa 3016875  T
Q  201 ttaatgtacnnnnnnn-ttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggca 299  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3016874 ttaatgtacaaaaaaaattatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaactcactcaagcaggaggca 3016775  T
Q  300 agggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3016774 agggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttc 3016715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 3032810 - 3032455
Alignment:
Q  1 agatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatgtagattttcaa 100  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||||| || ||||  ||   ||||| ||||||||| ||||||||||||||||||    
T  3032810 agatccagcattaccacacatgacctgacttttgcaactgtttcgaggattaaagtcctctttgagtaccatcggcttgacttatcatgtagattttcaa 3032711  T
Q  101 aagaagatacaattaatctcaagacctcctgnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataatagaatagaattcaa 200  Q
    | |||||||||||||| || |||||||||||        ||||| |||| |||||||||||  |||  |||||||| ||||||||||||||  |||| |     
T  3032710 atgaagatacaattaacctaaagacctcctgaaagaaaatgacaacataaaactcaacagatgtaatatgttaagagcatgataatagaattcaattaat 3032611  T
Q  201 ttaatgtacnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggcaa 300  Q
    |||  | ||       || |   || ||||||||||||   |||||  |||||| |||| ||||||||||||||||||| |||||| |||||||||||||    
T  3032610 ttatagcacaaaatcattgt---gcgcaccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactgaagcaggaggcaa 3032514  T
Q  301 gggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttc 359  Q
    | || ||||||||| || ||||||||||||||||||||||||||| ||| |||||||||    
T  3032513 gagccactttgacatcagcatctgaatgctttataagtttatcagcaattaatgctttc 3032455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 48969974 - 48970027
Alignment:
Q  64 tcataccaacggcttgacatatcatgtagattttcaaaagaagatacaattaat 117  Q
    |||||| | |||||| || ||||||||||||||||||| |||||||||||||||    
T  48969974 tcatacgatcggcttaacttatcatgtagattttcaaatgaagatacaattaat 48970027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University