View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19144_low_8 (Length: 370)

Name: NF19144_low_8
Description: NF19144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19144_low_8
NF19144_low_8
[»] chr2 (4 HSPs)
chr2 (5-260)||(19031372-19031631)
chr2 (78-192)||(20586799-20586911)
chr2 (82-224)||(20589156-20589292)
chr2 (75-240)||(23855718-23855881)
[»] chr7 (3 HSPs)
chr7 (83-240)||(15080660-15080817)
chr7 (83-231)||(19707198-19707347)
chr7 (105-177)||(14616631-14616703)
[»] chr6 (2 HSPs)
chr6 (82-224)||(22723326-22723467)
chr6 (77-206)||(10202138-10202267)
[»] chr1 (6 HSPs)
chr1 (82-177)||(41581229-41581324)
chr1 (82-177)||(13118202-13118296)
chr1 (262-346)||(43355000-43355084)
chr1 (140-178)||(24925494-24925532)
chr1 (116-177)||(17688864-17688925)
chr1 (105-177)||(17107405-17107477)
[»] scaffold0039 (1 HSPs)
scaffold0039 (78-177)||(32145-32244)
[»] chr3 (3 HSPs)
chr3 (95-129)||(14405634-14405668)
chr3 (265-317)||(2831163-2831215)
chr3 (132-224)||(12223253-12223344)
[»] scaffold0010 (1 HSPs)
scaffold0010 (82-240)||(135022-135180)
[»] chr5 (1 HSPs)
chr5 (262-354)||(27082294-27082386)
[»] chr8 (1 HSPs)
chr8 (105-177)||(14756285-14756357)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 19031631 - 19031372
Alignment:
Q  5 ggagcagcacagaccaattttaacgaactgtaacgtctctttcctctctcatttgtaaaatcactttgaaaaattgtaaaatcactctaaagtcttttct 104  Q
    |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19031631 ggagcaacagagaccaattttaacgaactataacgtctctttcctctctcatttgtaaaatcactttgtaaaattgtaaaatcactctaaagtcttttct 19031532  T
Q  105 ctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatttcttagggtgctataggcaaattgtaa 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19031531 ctctcattttctacaaacctcttcagattaaagaccttttctaagaacacttgtgggatttgagatctagatttcttagggtgctataggcaaattgtaa 19031432  T
Q  205 gtatcatttcattcaaggattttggtgagcatcaagaat----agcaaaaggaggtattt 260  Q
    ||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  19031431 gtatcgtttcattcaaggattttggtgagcatcaagaatctagagcaaaaggaggtattt 19031372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 20586799 - 20586911
Alignment:
Q  78 ttgtaaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||| |||| |  ||| | || |||||||| |||||||||||||||||||||| | | |    
T  20586799 ttgtaaaatcactctaaagtctttactctctc-ttttctataaacttctttacattatacactttttctaataacacttgtgggatttgagatcaaca-t 20586896  T
Q  178 tcttagggtgctata 192  Q
    | |||||||||||||    
T  20586897 tgttagggtgctata 20586911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 20589156 - 20589292
Alignment:
Q  82 aaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatttctt 181  Q
    |||||||||||||||||||| ||||||| ||||     ||  ||||||| ||||| || |||||||||||||||||   |||||||||||||| ||| ||    
T  20589156 aaaatcactctaaagtctttactctctcttttt-----aatttcttcagattaaatactttttctaagaacacttgaatgatttgagatctag-tttgtt 20589249  T
Q  182 agggtgctataggcaaattgtaagtatcatttcattcaaggat 224  Q
    ||||| || |||| ||||| || || | |||||||||| ||||    
T  20589250 agggtactttaggaaaattataggtttgatttcattcatggat 20589292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 23855718 - 23855881
Alignment:
Q  75 aaattgtaaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctag 174  Q
    |||||| |||| |||||||||||||| |||||||  | || ||||||| | || || ||||| | || || ||||||||||||| |||||| |||| |||    
T  23855718 aaattggaaaaacactctaaagtcttgtctctcttttattttacaaacttttttagattaaaca-ctattataagaacacttgtaggattt-agatatag 23855815  T
Q  175 atttcttagggtgctataggcaaattgtaagtatcatttcattcaaggattttggt-gagcatcaag 240  Q
    |||| | ||||||||||| |  |||||||  | |  |||||||||||||| ||||| ||||||||||    
T  23855816 attt-taagggtgctatatgataattgtatatttggtttcattcaaggatcttggtggagcatcaag 23855881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 15080817 - 15080660
Alignment:
Q  83 aaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatttctta 182  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||  ||||  || ||||||||||||||||||||||||||||||||| |||| |||    
T  15080817 aaatcactctaatgtctcttctctctcattttctacaaacctcatcatattaatcactttttctaagaacacttgtgggatttgagatctatattt-tta 15080719  T
Q  183 gggtgctataggcaaattgtaagtatcatttcattcaaggattttggt-gagcatcaag 240  Q
    ||||| |||||| || ||||  || | ||||||||  ||||| ||||| ||||||||||    
T  15080718 gggtgttatagggaagttgtcggttttatttcatttgaggatcttggtggagcatcaag 15080660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 19707347 - 19707198
Alignment:
Q  83 aaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtg----ggatttgagatctagattt 178  Q
    ||||||||||||||| ||||||||||  |||| ||||||| |||| || ||||  || ||||||||||||||||||     |||||||||||||||| ||    
T  19707347 aaatcactctaaagttttttctctct--ttttgtacaaacttctttagattaatcactttttctaagaacacttgtacgtaggatttgagatctaga-tt 19707251  T
Q  179 cttagggtgctataggcaaattgtaagtatcatttcattcaaggattttggtg 231  Q
     ||||||||| ||||| | || |||||| |  |||||||||||| | ||||||    
T  19707250 gttagggtgccataggaacatggtaagtttggtttcattcaagggtcttggtg 19707198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 14616703 - 14616631
Alignment:
Q  105 ctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    ||||| |||||||||  | ||||||||||||| || |||| |||||||  |||| | ||||||||||||||||    
T  14616703 ctctccttttctacatccttcttcagtttaaacactttttttaagaactattgtagaatttgagatctagatt 14616631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 22723326 - 22723467
Alignment:
Q  82 aaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatttctt 181  Q
    |||| ||||||||||| | ||||||||| ||||| ||| ||||||| || ||||| || |||| ||||||||||||| |||||| ||||||||| || ||    
T  22723326 aaaaacactctaaagtttcttctctctctttttccacatacctctttagattaaacactttttttaagaacacttgtaggattttagatctaga-ttgtt 22723424  T
Q  182 agggtgctataggcaaattgtaagtatcatttcattcaaggat 224  Q
    |||||||||||||  |||||||||| |  ||||||||||||||    
T  22723425 agggtgctataggataattgtaagtttggtttcattcaaggat 22723467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 10202267 - 10202138
Alignment:
Q  77 attgtaaaatcactctaaagtcttttctctctcattttct--acaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctag 174  Q
    |||| |||| ||||||| ||||||||||||||  |||| |  | |||| ||||||| ||||| | | ||||||||||||||| |  ||||||||||||||    
T  10202267 attgcaaaaacactctagagtcttttctctctatttttttaaaaaaacttcttcagattaaaca-catttctaagaacacttatatgatttgagatctag 10202169  T
Q  175 atttcttagggtgctataggcaaattgtaagt 206  Q
    | || |||||||| ||| ||  ||||||||||    
T  10202168 a-ttgttagggtgttattggataattgtaagt 10202138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 41581324 - 41581229
Alignment:
Q  82 aaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    |||| ||||||||||||| |   ||||| |||||||||||| ||||||| ||||| |  ||||||||||||  |||| ||||||||||||||||||    
T  41581324 aaaaacactctaaagtctctagactctctttttctacaaacttcttcagattaaacattttttctaagaactattgtaggatttgagatctagatt 41581229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 13118202 - 13118296
Alignment:
Q  82 aaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    |||| ||||||||||| |||||||| || |||||||| ||| |||| || ||||| || |||||||  ||||||||| ||| ||||||||||||||    
T  13118202 aaaaacactctaaagttttttctctttctttttctac-aacttctttagattaaacactttttctagaaacacttgtaggaattgagatctagatt 13118296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 43355000 - 43355084
Alignment:
Q  262 ttattcttttttattaataatatataagatttgatgtagttgacacatgaagttttggagggtcagcaaagttgggattttaaaa 346  Q
    |||||||||||||||||||||||||| ||   |||| | |||||||| || |||||| || ||| ||| ||||| ||||||||||    
T  43355000 ttattcttttttattaataatatatatgacaagatgcatttgacacacgatgttttgaagtgtcggcatagttgtgattttaaaa 43355084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 24925532 - 24925494
Alignment:
Q  140 cttttctaagaacacttgtgggatttgagatctagattt 178  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  24925532 cttttctaagaactcttgtcggatttgagatctagattt 24925494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 17688864 - 17688925
Alignment:
Q  116 tacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    ||||||| ||||||  ||||| || | || ||||||||||||| ||||||||||||||||||    
T  17688864 tacaaacttcttcatattaaacacttcttttaagaacacttgtaggatttgagatctagatt 17688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 17107477 - 17107405
Alignment:
Q  105 ctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    |||||| |||||| |||| ||||||| ||||| || ||||||||||||  |||  ||||||||||||| ||||    
T  17107477 ctctcactttctataaacttcttcagattaaacactttttctaagaacttttgaaggatttgagatctggatt 17107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 32145 - 32244
Alignment:
Q  78 ttgtaaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    |||| ||||||||  |||||||||| ||| || ||||| |||||| |||  || ||||| |  ||||||||||| |||||| ||||||||||||||||||    
T  32145 ttgttaaatcacttcaaagtcttttatctttctttttcaacaaacttctatagattaaatattttttctaagaaaacttgtaggatttgagatctagatt 32244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 14405668 - 14405634
Alignment:
Q  95 agtcttttctctctcattttctacaaacctcttca 129  Q
    |||||||||||||||||||||||||||||||||||    
T  14405668 agtcttttctctctcattttctacaaacctcttca 14405634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 2831215 - 2831163
Alignment:
Q  265 ttcttttttattaataatatataagatttgatgtagttgacacatgaagtttt 317  Q
    |||||||||||||||||||||| ||||  |||| | ||||||||||| |||||    
T  2831215 ttcttttttattaataatatatgagatgagatgcatttgacacatgatgtttt 2831163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 12223253 - 12223344
Alignment:
Q  132 ttaaagaccttttctaagaacacttgtgggatttgagatctagatttcttagggtgctataggcaaattgtaagtatcatttcattcaaggat 224  Q
    ||||| || |||||||||||||||||| ||||||||||| |  | || ||||||||||||| |  |||||||| | |  ||||||||||||||    
T  12223253 ttaaacactttttctaagaacacttgtaggatttgagattttta-ttgttagggtgctataagataattgtaaatttggtttcattcaaggat 12223344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 135180 - 135022
Alignment:
Q  82 aaaatcactctaaagtcttttctctctcattttctacaaacctcttcagtttaaagac-cttttctaagaacacttgtgggatttgagatctagatttct 180  Q
    ||||||||||||||||||||||||| |  |||| || |||| ||||||| ||||| ||  ||||| |||||||||| | |||| | ||||||||  || |    
T  135180 aaaatcactctaaagtcttttctctat-tttttttataaacttcttcagattaaacacttttttcgaagaacacttttaggatattagatctag-gttgt 135083  T
Q  181 tagggtgctataggcaaattgtaagtatcatttcattcaaggattttggt-gagcatcaag 240  Q
    |||||||||||| | |||||| |||| |  ||||| |||| ||| ||||| ||||||||||    
T  135082 tagggtgctataagaaaattgcaagtttggtttcaatcaatgatcttggtggagcatcaag 135022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 27082294 - 27082386
Alignment:
Q  262 ttattcttttttattaataatatataagatttgatgtagttgacacatgaagttttggagggtcagcaaagttgggattttaaaacatgtatt 354  Q
    |||||||||||||||||||||||||| |||  |||| | |||| ||| ||  ||||| || ||||||| |||| | ||| |||||||||||||    
T  27082294 ttattcttttttattaataatatataggatgagatgcatttgatacaagatattttgaagtgtcagcatagtttgaattgtaaaacatgtatt 27082386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 14756357 - 14756285
Alignment:
Q  105 ctctcattttctacaaacctcttcagtttaaagaccttttctaagaacacttgtgggatttgagatctagatt 177  Q
    ||||| ||||||||||   ||||||| ||||| || |||||||||||| ||||| | |||||| |||||||||    
T  14756357 ctctctttttctacaattttcttcagattaaatactttttctaagaactcttgtagaatttgatatctagatt 14756285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University