View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19145_high_12 (Length: 427)
Name: NF19145_high_12
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 1503518 - 1503103
Alignment:
| Q |
1 |
tagctttttattgatgattttcctcctccttatacattggaatagggttaggtataactaaatttataaactacatttcttctatgcaaataactaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1503518 |
tagctttttattgatgattttcctcctccttatacattggaatagggttaggtataactaaatttataaactacatttcttctatgcaaataactaactt |
1503419 |
T |
|
| Q |
101 |
tgaccatatggtaagacacatttctcgttttttgttgttttgtatgaatcagcttagatgcatagggaaataataaaatcaaatttatgatggcttgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1503418 |
tgaccatatggtaagacacatttctcgttttttgttgttttgtatgaatcagcttagatgcatagggaaataataaaatcaaatttatgatggcttgcaa |
1503319 |
T |
|
| Q |
201 |
atttggtgaaggactaaaagctttcttaggaaaaggttnnnnnnnntgaaaaacaagtgagttaattaaaaaggnnnnnnnnnnnnactgttcaaacaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
1503318 |
atttggtgaaggactaaaagctttcttaggaaaaggttaaaaaaaatgaaaaacaagtgagttaattgaaaagg-tttttttttttactgttcaaacaaa |
1503220 |
T |
|
| Q |
301 |
aacaagagaaagggtaaaaacaacttccttgtgatccactagaggaaataaagagccatttnnnnnnnnnnnnnnnnnncttgatcatcttctttcattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1503219 |
aacaagagaaagggtaaaaacaacttccttgtgatccactaggggaaataaagagccatttaaaaaaaaaaaaaaaaaacttgatcatcttctttcattt |
1503120 |
T |
|
| Q |
401 |
tcctcttcatctctctg |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1503119 |
tcctcttcatctctctg |
1503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1508742 - 1508628
Alignment:
| Q |
1 |
tagctttttattgatgattttcctcctccttatacattggaatagggttaggtataactaaatttataaactacatttcttctatgcaaataactaactt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||| | ||||| ||||| |
|
|
| T |
1508742 |
tagctttttattgacaattt-cctcctccttgtacattggtatagggtttggtataactaaatttataga-tacatttcttctatgtacataacaaactt |
1508645 |
T |
|
| Q |
101 |
tgaccatatggtaagac |
117 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
1508644 |
tgaccatagagtaagac |
1508628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 1508623 - 1508547
Alignment:
| Q |
161 |
catagggaaataataaaatcaaatttatgatggcttgcaaatttggtgaaggactaaaagctttcttaggaaaaggtt |
238 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||| |||||||||||| | | |||||||| ||||||||||||| |
|
|
| T |
1508623 |
catagggaaataataaagttcaatttatgatagcttgtaaatttggtgaacaaat-aaagctttgttaggaaaaggtt |
1508547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University