View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_high_16 (Length: 375)

Name: NF19145_high_16
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_high_16
NF19145_high_16
[»] chr5 (15 HSPs)
chr5 (1-360)||(8644094-8644453)
chr5 (1-359)||(8636749-8637107)
chr5 (1-360)||(8677687-8678055)
chr5 (1-350)||(8535383-8535732)
chr5 (1-344)||(9074604-9074944)
chr5 (63-291)||(8528890-8529115)
chr5 (1-282)||(8641256-8641534)
chr5 (1-344)||(9003352-9003685)
chr5 (1-188)||(8548128-8548315)
chr5 (220-285)||(2904938-2905003)
chr5 (220-291)||(2856824-2856895)
chr5 (220-291)||(2874434-2874505)
chr5 (230-345)||(1600180-1600293)
chr5 (220-291)||(2844997-2845068)
chr5 (1-172)||(1600336-1600504)
[»] chr7 (2 HSPs)
chr7 (1-353)||(35779719-35780062)
chr7 (121-293)||(48361784-48361953)
[»] chr4 (1 HSPs)
chr4 (63-291)||(9443051-9443276)
[»] chr6 (3 HSPs)
chr6 (220-291)||(16716447-16716518)
chr6 (123-169)||(16716363-16716409)
chr6 (1-36)||(16716229-16716264)
[»] chr1 (2 HSPs)
chr1 (12-185)||(5130699-5130876)
chr1 (231-293)||(26324202-26324264)
[»] scaffold0627 (3 HSPs)
scaffold0627 (218-350)||(4746-4878)
scaffold0627 (1-42)||(4542-4583)
scaffold0627 (123-169)||(4663-4709)


Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8644094 - 8644453
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8644094 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttc 8644193  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8644194 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggt 8644293  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8644294 ctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaag 8644393  T
Q  301 aatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644394 aatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttac 8644453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 8636749 - 8637107
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || |||||||||||||    
T  8636749 ccttcaatgagattagacttggaacatgtggaattatttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttc 8636848  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  8636849 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggt 8636948  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  8636949 ctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacggaaaa 8637048  T
Q  301 aatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgtta 359  Q
    || ||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  8637049 aagatgtatcacaaatataaagtaatccccttaattctccaatgcgaatacactcgtta 8637107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8677687 - 8678055
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8677687 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttc 8677786  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  8677787 atagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgttttaccggccaacataaaccataatgccgcgaatcaggt 8677886  T
Q  201 ctgcccaaaggact---------gaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 291  Q
    ||||||||||||||         ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8677887 ctgcccaaaggactgacaggacggaccacaatatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacat 8677986  T
Q  292 cacgaaaagaatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttac 360  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||    
T  8677987 cacggaaaggatatgtatcgcaaatgtaaagtaatcctcttaattttcccatgtgaatacgcttgttac 8678055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 8535383 - 8535732
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||| |||||||||||||  ||||| |||| ||||| ||| |  |||  | | |||| |||||||||||||| |||  ||| |||||| |||||    
T  8535383 ccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttc 8535482  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||  ||||| | ||||||||| | | | | | || |     
T  8535483 atagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacga 8535582  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
    ||  || ||||| |||   |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||     
T  8535583 ctttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatca-gataaa 8535681  T
Q  301 aatat-gtatcgcaaatgtaaagtaatccccttaattctcccatgcgaata 350  Q
    ||  | | ||| ||||||||||| |||||| ||||||||||||||| ||||    
T  8535682 aaggtcgaatcacaaatgtaaagaaatccctttaattctcccatgctaata 8535732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 9074944 - 9074604
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||| ||||||||||||| |||||| |||| ||||| ||| |  |||  | | || ||||||||||||||||||||  ||| |||||| |||||    
T  9074944 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttc 9074845  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    |||| |||||| ||||||| || |||||||||||||||||||||| || |||||||||||||||| ||||   ||||||||  ||| |   | |  | |     
T  9074844 atagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc---cataaacctgaaccccatgtaataaga 9074748  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
    | |||| ||||| ||| | |||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||| || ||||||| || ||     
T  9074747 cagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatca-gataaa 9074649  T
Q  301 aatatgta-tcgcaaatgtaaagtaatccccttaattctcccatg 344  Q
    ||| |  | || ||||||||||| |||||| ||||||||||||||    
T  9074648 aatgtccagtcacaaatgtaaagaaatccctttaattctcccatg 9074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 291
Target Start/End: Original strand, 8528890 - 8529115
Alignment:
Q  63 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 162  Q
    ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||||||||||||    
T  8528890 tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 8528989  T
Q  163 ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgcc 262  Q
    ||| |||||| | ||||||||||| | | | | ||   |   |||||||| ||| | ||||||| || ||||||| ||||||||||||||||||||||||    
T  8528990 ttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc 8529086  T
Q  263 atattcattcataacccacattgcaacat 291  Q
    ||||||||||||||||||||||| |||||    
T  8529087 atattcattcataacccacattgaaacat 8529115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 8641256 - 8641534
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||   ||| ||| |||| || ||||||   ||||||||| |        || |||||||    
T  8641256 ccttcaatgagattagacttggaatatgtggaattacttcaactctttctgaacaagtcccatgaattttgaaaactttgca--------tcccgggttc 8641347  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcga---atca 197  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| || |||||||||||| ||||||||||||||| |||||||| |    |   | ||    
T  8641348 atagtagataa-acaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataaccccaaaagagacca 8641446  T
Q  198 ggtctgcccaaaggactgaccaaag---tatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccaca 282  Q
    ||   |||||||| | ||||  |||   ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8641447 ggatagcccaaagaattgactgaagtattatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccaca 8641534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 9003352 - 9003685
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||  ||   ||  ||||||| | |||||||| ||||  ||||||||||||||||    
T  9003352 ccttcaatgagattagacttggaatatgtggaattacttcaactaattttgattgagccccgtgaacttgaaaaactctgaatccatgtttctcgggttc 9003451  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    ||||||||  | ||||||| | || | ||| |||||||||  ||| | |||||||||  |||||||||||||||| ||||||  |  | |  | ||||||    
T  9003452 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggt 9003551  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
     |||||||||||| | |  ||||||||||  |||||||||||||||| ||          ||||| || |||||||||||  |||||||||||   | ||    
T  9003552 atgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtccaaga----------ccatactccttcataacccaagttgcaacatcaaagagag 9003641  T
Q  301 aatatgtatcgcaaatgtaaagtaatccccttaattctcccatg 344  Q
    |  |||  || ||||||||||| |||||||||||||||||||||    
T  9003642 aggatgagtcacaaatgtaaagaaatccccttaattctcccatg 9003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 8548315 - 8548128
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| |||| |||||| |||||   |||  ||||||| ||| |||||||||||| ||||||   ||| ||| ||||| |     
T  8548315 ccttcaatgagattagacttggaatatgttgaattacttcaaatgattgtgaagaagagccatgaattcgaaaatctttgactccatatttatcggggtt 8548216  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgc 188  Q
    ||||||  ||| |||||   | |||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||| ||| ||||    
T  8548215 atagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaacacaaagcatgacgc 8548128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
Q  220 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattg 285  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2905003 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 2856895 - 2856824
Alignment:
Q  220 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 291  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2856895 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 2874505 - 2874434
Alignment:
Q  220 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 291  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2874505 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 1600293 - 1600180
Alignment:
Q  230 cttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgta-tcgcaaatgtaaagtaatcc 328  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| || |  || | ||| || ||||||||||| |||||    
T  1600293 cttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gata--aaaaggtagtcacaaatgtaaagaaatcc 1600197  T
Q  329 ccttaattctcccatgc 345  Q
    | |||||||||||||||    
T  1600196 ctttaattctcccatgc 1600180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 2845068 - 2844997
Alignment:
Q  220 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 291  Q
    ||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2845068 aagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1600504 - 1600336
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||| ||||||||||||| ||| || |||||||||| | | || |||  | | || ||||||  |||| ||||| |   || |||| | |||||    
T  1600504 ccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttc 1600405  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggcca 172  Q
    ||| ||||| | ||||||| |   || |||||||||||||||||| || ||||||||||||| || ||||||    
T  1600404 ataatagattaaacaattgta---atcatataacaatatggcagcaccttcttcaaagtgttgtatcggcca 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 35779719 - 35780062
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttc 100  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||| |||  |||  ||| ||  ||||||||||||||||| |  ||| |||||| |||||    
T  35779719 ccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaactttgtatccatatttctcaggttc 35779818  T
Q  101 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggt 200  Q
    | ||||||||| ||||||||| |||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||| | |||  |||     
T  35779819 aaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaacataaaccataacgcggtgaaatagga 35779909  T
Q  201 ctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaag 300  Q
      ||| | || | ||||| |||| ||||| ||||||||||||||||| |||||| |||||||||  ||||||||||||||||||| |||||||  ||||     
T  35779910 tagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaa 35780009  T
Q  301 aatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgc 353  Q
    |||     || ||||||||||| |||||| ||||||||||||||| |||||||    
T  35780010 aattcaagtcacaaatgtaaagaaatccctttaattctcccatgctaatacgc 35780062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 48361953 - 48361784
Alignment:
Q  121 aggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaa 220  Q
    ||||||||||||||||||||||||| || |||||||||||||||| ||||||   |||| |  || ||   ||| ||   |||| | ||||| ||| |      
T  48361953 aggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca---taaagctgaatgccaagaagcaaaactgctcgaaggattgaacgc 48361857  T
Q  221 agtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatca 293  Q
    |||||  || ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||    
T  48361856 agtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatca 48361784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 291
Target Start/End: Original strand, 9443051 - 9443276
Alignment:
Q  63 tgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 162  Q
    ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||||||||||||    
T  9443051 tgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 9443150  T
Q  163 ttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcaatcttgtaaaccttagtccatgattctccaatgcc 262  Q
    ||| |||||| | ||||||||||| | | | | ||   |   |||||||| ||| | ||||||| || ||||||| ||||||||||||||||||||||||    
T  9443151 ttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcc 9443247  T
Q  263 atattcattcataacccacattgcaacat 291  Q
    ||||||||||||||||||||||| |||||    
T  9443248 atattcattcataacccacattgaaacat 9443276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 16716447 - 16716518
Alignment:
Q  220 aagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat 291  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16716447 aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacat 16716518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  123 gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg 169  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16716229 - 16716264
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaatta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  16716229 ccttcaatgagattagacttggaatatgtggaatta 16716264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 5130699 - 5130876
Alignment:
Q  12 attagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagta-gata 110  Q
    |||||||||| || ||||||||||| |||||    ||  ||| |||| || |||||||||||||||||| |   || |||||| ||||||| ||| || |    
T  5130699 attagacttgaaatatgtggaattacttcaatcttttttgaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagaca 5130798  T
Q  111 agacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggcc---aacataaaccataa 185  Q
    | ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||   ||||||||||||||    
T  5130799 aaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaacataaaccataa 5130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 26324264 - 26324202
Alignment:
Q  231 ttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatca 293  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26324264 ttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatca 26324202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 350
Target Start/End: Original strand, 4746 - 4878
Alignment:
Q  218 caaagtatcaatcttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacgaaaagaatatgtatcgcaaatg 317  Q
    |||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||     || || | ||  || ||||||    
T  4746 caaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttgagtcacaaatg 4845  T
Q  318 taaagtaatccccttaattctcccatgcgaata 350  Q
    ||||| |||||| ||||||||||||||| ||||    
T  4846 taaagaaatccctttaattctcccatgctaata 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4542 - 4583
Alignment:
Q  1 ccttcaatgagattagacttggaacatgtggaattatttcaa 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  4542 ccttcaatgagattagacttggaatatgtggaattacttcaa 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  123 gaatgatataacaatatggcagccccctcttcaaagtgttttaccgg 169  Q
    ||||||| ||||||||  ||||| |||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University