View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_high_20 (Length: 334)
Name: NF19145_high_20
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 17345557 - 17345866
Alignment:
| Q |
11 |
cacagattgagtcagtgactaatgataacttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagtcttgtttcttgttta |
110 |
Q |
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| T |
17345557 |
cacagattgagtcagtgactaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagtcttgtttcttgttta |
17345656 |
T |
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| Q |
111 |
ttccactggtaaagtattagttgcataagataatttatagaaagtaatctagtttttcctccnnnnnnngcaccatttattggagtatattgcatggatg |
210 |
Q |
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| T |
17345657 |
ttccactggtaaagtattagttgcataagataacttgtagaaagtaatctagtttttcctccattttttgcaccatttattggagtatattgcatggatg |
17345756 |
T |
|
| Q |
211 |
cgagtcgatcaccaatttaatatttgaaattcgacatttaattgatttcgtctccgacaatataaggttggattggtggttggagcgagggagttaagtg |
310 |
Q |
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| T |
17345757 |
cgagtcgatcaccaatttaatatttgaaattcgacatttaattgatttcgtctccgacaatataaggttggattggtggttggagcgagggagttaagtg |
17345856 |
T |
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| Q |
311 |
aagtgataac |
320 |
Q |
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|||||||||| |
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| T |
17345857 |
aagtgataac |
17345866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 17138960 - 17138836
Alignment:
| Q |
11 |
cacagattgagtcagtgactaatgataacttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagtcttgtttcttgttta |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
17138960 |
cacagattgagtcagtgactaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttcttggttattcttgtttcatgttta |
17138861 |
T |
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| Q |
111 |
ttccactggtaaagtattagttgca |
135 |
Q |
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|||||||||||||| |||||||||| |
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| T |
17138860 |
ttccactggtaaagcattagttgca |
17138836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 17138007 - 17137956
Alignment:
| Q |
201 |
tgcatggatgcgagtcgatcaccaatttaatatttgaaattcgacatttaat |
252 |
Q |
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| T |
17138007 |
tgcatggatgcgagtcgatcaccaatttaatctttgaatttcgacatttaat |
17137956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 37092376 - 37092287
Alignment:
| Q |
6 |
aggagcacagattgagtcagtgactaatgataacttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt |
95 |
Q |
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|||| |||||||||| || || |||||||||||||||||| | | |||||| |||||||||||| |||||||||| |||||||||||||| |
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| T |
37092376 |
aggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagt |
37092287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 8572740 - 8572670
Alignment:
| Q |
25 |
gtgactaatgataacttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt |
95 |
Q |
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||||| |||||||| | ||||||||||| || || ||||||||||||||||| |||||||| |||||||| |
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| T |
8572740 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggttagt |
8572670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 445221 - 445273
Alignment:
| Q |
14 |
agattgagtcagtgactaatgataacttgattatcaatgtttttaatagcttg |
66 |
Q |
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||||||||| |||| | ||||||| |||||||||||||||||| || |||||| |
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| T |
445221 |
agattgagtgagtggccaatgatatcttgattatcaatgttttgaacagcttg |
445273 |
T |
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