View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_high_22 (Length: 332)
Name: NF19145_high_22
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 44752046 - 44752353
Alignment:
| Q |
16 |
caagtttaaattaatttaaataattgaccaaatatgaacaggggaaaaagattcatt-ggcttctcatgtatatacgtatagttactcattgaagacatg |
114 |
Q |
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| T |
44752046 |
caagtttaaattaatttaaataattgaccaaatatgaacaggggaaaaagattcattaggcttctcatgtatatacgtatagttactgattgaagacatg |
44752145 |
T |
|
| Q |
115 |
ttcataattacaatttcattcaagtacatgaatcctcattttccctttcttatgtcatttggaaatactcccaacaagtttannnnnnnaatataaggaa |
214 |
Q |
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| T |
44752146 |
ttcataattataatttcattcaagtacatgaaacctcattttccctttcttatgtcatttggaaatactcc---caagtttatttttttaatataaggaa |
44752242 |
T |
|
| Q |
215 |
caaggaacctagttactgtagtaaataaagtgnnnnnnnnnnnnnnnnnnnnnnttgcatttgctcatgaatatataattaatcaatgatatgatcttat |
314 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44752243 |
caaggaacctagttactgtagtaaataaagtgaaaaaaaatgaaaaggaaaaaattgcatttgctcatgaatatataattaatcaatgatatgatcttat |
44752342 |
T |
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| Q |
315 |
atttgcctatg |
325 |
Q |
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||||||||||| |
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| T |
44752343 |
atttgcctatg |
44752353 |
T |
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