View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_high_29 (Length: 267)
Name: NF19145_high_29
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 1514377 - 1514484
Alignment:
| Q |
13 |
aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag |
112 |
Q |
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| T |
1514377 |
aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag |
1514476 |
T |
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| Q |
113 |
aaagaacc |
120 |
Q |
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||| |||| |
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| T |
1514477 |
aaaaaacc |
1514484 |
T |
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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 1514550 - 1514632
Alignment:
| Q |
185 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaat |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514550 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaat |
1514632 |
T |
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