View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_high_33 (Length: 250)
Name: NF19145_high_33
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_33 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 20691404 - 20691641
Alignment:
| Q |
13 |
aatatacgaacatcgtaatggtgaagaactttattagtagcgacttgcacatggaaatgattggcgcgaactcgaatcttccttcctacttgaccgaaac |
112 |
Q |
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| T |
20691404 |
aatatacgaacatcgtaatggtgaagaactttattagtagcgacttgcacatggaaatgattggcgcgaactcgaatcttccttcctacttgaccgaaac |
20691503 |
T |
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| Q |
113 |
caggacggtcagggaaccttgtcgccttctgagacgacggagcagaagcctccggaaccgtctccagtgtaagcttcttttcaagttcagaactcagcaa |
212 |
Q |
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| T |
20691504 |
caggacggtcagggaaccttgtcgccttctgagacgacggagcagaagcctccggaaccgtctccagtgtaagcttcttttcaagttcagaactcagcaa |
20691603 |
T |
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| Q |
213 |
ttctgtcgtcgtaggcagagacgaagatggaacagttg |
250 |
Q |
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| T |
20691604 |
tgctgtcgtcggaggcagagacgaagatggaacagttg |
20691641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 20666803 - 20666910
Alignment:
| Q |
55 |
acttgcacatggaaatgattggcgcgaactcgaatcttccttcctacttgaccgaaaccaggacggtcagggaaccttgtcgccttctgagacgacggag |
154 |
Q |
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| T |
20666803 |
acttgcagctggaaatgattagcacgaacttgaattttccttcctaatcgaccgataccaggtctgttaggaaacctcaccgccttctgagacgacggcg |
20666902 |
T |
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| Q |
155 |
cagaagcc |
162 |
Q |
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| T |
20666903 |
ctgaagcc |
20666910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 44507986 - 44507844
Alignment:
| Q |
50 |
tagcgacttgcacatggaaatgattggcgcgaactcgaatcttccttcctacttgaccgaaaccaggacggtcagggaaccttgtcgc---cttctgaga |
146 |
Q |
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| T |
44507986 |
tagcgacttgcaactggaaatgatttgcctgaactggaatcttccttccttcttgaccgaaaccaggtcggtcagggaaccttatcaccttcttctgaga |
44507887 |
T |
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| Q |
147 |
cgacggagcagaagcctccggaaccgtctccagtgtaagcttc |
189 |
Q |
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| T |
44507886 |
cgatggagcagaagcctcgggaaccatctccggcgtaagcttc |
44507844 |
T |
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