View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19145_high_5 (Length: 528)
Name: NF19145_high_5
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 21 - 495
Target Start/End: Complemental strand, 41606818 - 41606342
Alignment:
| Q |
21 |
ctccggcggttgataacatcatcaagaaacactacacatctaccagcagaaccaccatgtttgtatggtggtgctgctacttttcctccaccaaattatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606818 |
ctccggcggttgataacatcatcaagaaacactacacatctaccagcagaaccaccatgtttgtatggtggtgctgctacttttcctccaccaaattatt |
41606719 |
T |
|
| Q |
121 |
cctatgaccctatgatggttggtgatgttttctaccctcgtagtaacttcactcaccaccactatgactattcctccactgttaaccctacaactaccac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606718 |
cctatgaccctatgatggttggtgatgttttctaccctcgtagtaacttcactcaccaccactatgactattcctccactgttaaccctacaactaccac |
41606619 |
T |
|
| Q |
221 |
tatagctgctgcttctaattcagatcatgctactgcttctactgcattctgtgtaggtttagaaacttctgataaaggatggcttggtaactttgattct |
320 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606618 |
tatagctgctgcttcaaattcagatcatgctactgcttctactgcattctgtgtaggtttagaaacttctgataaaggatggcttggtaactttgattct |
41606519 |
T |
|
| Q |
321 |
tgtaacaacagatggcctagacaagagactctttctcttctagaaatcagatctcgtcttgattctaagttcagagagaataatcagaaagcacccttgt |
420 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606518 |
tgtaacaacagatggcccagacaagagactctttctcttctagaaatcagatctcgtcttgattctaagttcagagagaataatcagaaagcacccttgt |
41606419 |
T |
|
| Q |
421 |
ggaatgaaatttctaggtatatgttagtgtcttaa--ctcttaattaattactggtttaccaagctttttatttcac |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41606418 |
ggaatgaaatttctaggtatatgttagtgtcttaactctcttaattaattactggtttaccaagctttttatttcac |
41606342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 26598001 - 26598053
Alignment:
| Q |
330 |
agatggcctagacaagagactctttctcttctagaaatcagatctcgtcttga |
382 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
26598001 |
agatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttga |
26598053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University