View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_high_6 (Length: 516)
Name: NF19145_high_6
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 13080228 - 13079746
Alignment:
| Q |
16 |
atgtggtcaaaagaaagggcnnnnnnnttgaatatcttgtggagaaaagtgaaggcgaaagactcaaaagcaagcataatattgaaggaaagaaaggaaa |
115 |
Q |
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| T |
13080228 |
atgtggtcaaaagaaagggcaaaaaaattgaatatcttgtggagaaaagtgaaggtgaaagactcaaaagcaagcataatattgaaggaaagaaaggaaa |
13080129 |
T |
|
| Q |
116 |
taatgcaagagagacaatgcaagaaggtgaagagagtgagaatggaattaaggaaagtggtcaacaacatccaaaggaaaatattgtaaaagaaaagtct |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13080128 |
taatacaagagagacaatgcaagaaggtgaagagagtgagaatggaattaaggaaagtggtcaacaacatccaaaggaaaatattgtaaaagaaaagtct |
13080029 |
T |
|
| Q |
216 |
gaagtatcaaagaatatgtctgaagagttacaacatccggttgagaacatcaatggaaatattggattcgatgatgttgcagaggaggaagaacaaaagg |
315 |
Q |
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| T |
13080028 |
gaagtatcaaagaatatggctgaagagttacaacatccggttgagaacatcaatggaaatattggattcgatgatgttgcagaggaggaagaacaaaagg |
13079929 |
T |
|
| Q |
316 |
aggttatgaaagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgaggatga |
415 |
Q |
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| T |
13079928 |
aggttatgaaagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgaggatga |
13079829 |
T |
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| Q |
416 |
ggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttg |
498 |
Q |
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| T |
13079828 |
ggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttg |
13079746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 398 - 498
Target Start/End: Complemental strand, 13075639 - 13075539
Alignment:
| Q |
398 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075639 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
13075540 |
T |
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| Q |
498 |
g |
498 |
Q |
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| T |
13075539 |
g |
13075539 |
T |
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