View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_10 (Length: 446)
Name: NF19145_low_10
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 126 - 330
Target Start/End: Original strand, 26159263 - 26159466
Alignment:
| Q |
126 |
gggctgaaaatgttataggaaaacttgttggaccacttaaaaatcctagtgttgttggatgcaaggagaagagttagatttggaagtttgtgggactatt |
225 |
Q |
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| T |
26159263 |
gggctgaagatgttatgggaaaacttgttgaaccacttaaaaaccctaatgttgttggatgcaatgagaatagttagatttggaaggttgtgggactatt |
26159362 |
T |
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| Q |
226 |
tgtgggttgttggatgccagtggagatcactttctagatcaaggtttaggcagggctttggagttgattggtttatcttgaaggggttttcaagggaagg |
325 |
Q |
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| T |
26159363 |
-gtgggttgttggatgctagtggagatcgctgtctagatcaaggtttaggcagggctttggagttgattggtttatcatgaaggggttttcaagggaagg |
26159461 |
T |
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| Q |
326 |
ttaag |
330 |
Q |
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| T |
26159462 |
ttaag |
26159466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 78 - 369
Target Start/End: Original strand, 26199702 - 26199992
Alignment:
| Q |
78 |
gttattggaggcaagcgaatctttgtaaggacagaattgatcactacgggg-ctgaaaatgttataggaaaacttgttggaccacttaaaaatcctagtg |
176 |
Q |
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| T |
26199702 |
gttatcggaggcaagtgaatctttgtgaggacataattgaacgctatgggggctgaagatgttatgagaaaacttgttcaaccacttagaaatcctagtg |
26199801 |
T |
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| Q |
177 |
ttgttggatgcaaggagaagagttagatttggaagtttgtgggactatttgtgggttgttggatgccagtggagatcactttctagatcaaggtttaggc |
276 |
Q |
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| T |
26199802 |
ttgttagatgcaagaagaagaattggatttggaagcttgcgggactatt-gtggattgttggattccagtggagatctctgtttagatcaaggttcaagc |
26199900 |
T |
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| Q |
277 |
agggctttggagttgattggtttatcttgaaggggttttcaagggaaggttaaggatcaaggaagttgattgttaaaattaaatcactaccaa |
369 |
Q |
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| T |
26199901 |
aagactttggggttgattggtttatcttaaagggattttcaagggaaggttaaggactaaggaaattgatggtt-aatttaaattactaccaa |
26199992 |
T |
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