View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_11 (Length: 445)
Name: NF19145_low_11
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 34409175 - 34409598
Alignment:
| Q |
1 |
tccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409175 |
tccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgac |
34409274 |
T |
|
| Q |
101 |
aggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409275 |
aggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgctt |
34409374 |
T |
|
| Q |
201 |
atatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409375 |
atatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatc |
34409474 |
T |
|
| Q |
301 |
tgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctctcttgctgctgctgtcatgtctattgcgtaatatatttaatttcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34409475 |
tgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctctcttgctgctgctgtcatgtctattgcgtaatat-----atttcaa |
34409569 |
T |
|
| Q |
401 |
ctcatttatctttctattataagttatat |
429 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34409570 |
ctcatttatctttctattataagttatat |
34409598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
112 |
Q |
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|||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||||| |||||| |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
43853220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
125 |
Q |
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|||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || ||||| | |||||||||| |
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| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
|
| Q |
126 |
cttttggaccaaaattgggtctatatat |
153 |
Q |
| |
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||||||| |||||| ||||| ||||| |
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| T |
7979408 |
cttttgggaaaaaattaggtctttatat |
7979381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
125 |
Q |
| |
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|||||| | |||||||| | ||| |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| ||| |
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| T |
14198905 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg |
14198806 |
T |
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| Q |
126 |
cttttggaccaaaattgggtctatatatcattgttccacaacaact |
171 |
Q |
| |
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||||||| ||| |||||||| ||||| |||| ||||||||||| |
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| T |
14198805 |
cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact |
14198760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
| Q |
46 |
cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa |
121 |
Q |
| |
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|||| |||||||||||||||| ||||||||||| || || |||| ||||| || |||||||||||| | |||||| |
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| T |
38827460 |
cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa |
38827385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
| Q |
38 |
acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga |
111 |
Q |
| |
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||||||| |||| |||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||| |
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| T |
42986447 |
acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga |
42986374 |
T |
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