View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_12 (Length: 432)

Name: NF19145_low_12
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_12
NF19145_low_12
[»] chr3 (14 HSPs)
chr3 (45-419)||(6789464-6789839)
chr3 (144-419)||(17402794-17403073)
chr3 (146-419)||(1139958-1140220)
chr3 (12-114)||(6550327-6550429)
chr3 (17-119)||(6849109-6849211)
chr3 (17-104)||(6527528-6527615)
chr3 (17-144)||(6938429-6938556)
chr3 (12-100)||(6558852-6558940)
chr3 (18-108)||(6797236-6797326)
chr3 (200-333)||(20302625-20302760)
chr3 (200-292)||(20327167-20327259)
chr3 (27-91)||(6785697-6785761)
chr3 (18-71)||(9720624-9720677)
chr3 (243-300)||(41874441-41874497)
[»] chr4 (14 HSPs)
chr4 (142-419)||(7040302-7040580)
chr4 (144-419)||(23564687-23564963)
chr4 (141-419)||(18656048-18656327)
chr4 (144-419)||(52520542-52520821)
chr4 (142-419)||(52518698-52518979)
chr4 (182-417)||(23566383-23566599)
chr4 (200-328)||(3529251-3529379)
chr4 (200-328)||(23985773-23985901)
chr4 (227-389)||(54296454-54296617)
chr4 (143-333)||(3274538-3274729)
chr4 (200-397)||(52545137-52545333)
chr4 (200-300)||(24807423-24807522)
chr4 (312-397)||(56074680-56074766)
chr4 (200-250)||(18395816-18395866)
[»] chr8 (15 HSPs)
chr8 (144-419)||(30224173-30224449)
chr8 (144-419)||(5567369-5567645)
chr8 (140-419)||(25248951-25249225)
chr8 (146-419)||(3375446-3375709)
chr8 (158-417)||(6428699-6428958)
chr8 (146-397)||(31032038-31032285)
chr8 (180-375)||(3379172-3379366)
chr8 (229-340)||(36535924-36536035)
chr8 (200-262)||(14935576-14935638)
chr8 (144-197)||(5567676-5567729)
chr8 (377-419)||(36535863-36535905)
chr8 (230-293)||(29274786-29274849)
chr8 (318-397)||(19473649-19473728)
chr8 (318-397)||(19544574-19544653)
chr8 (318-397)||(19588043-19588122)
[»] chr2 (8 HSPs)
chr2 (143-419)||(29758062-29758339)
chr2 (289-375)||(8759121-8759207)
chr2 (155-323)||(20516053-20516227)
chr2 (146-212)||(8759203-8759269)
chr2 (299-397)||(18612074-18612174)
chr2 (140-201)||(31155713-31155774)
chr2 (200-260)||(18739671-18739730)
chr2 (301-338)||(17149025-17149062)
[»] chr7 (14 HSPs)
chr7 (146-419)||(44963108-44963382)
chr7 (144-419)||(20046507-20046787)
chr7 (143-419)||(28126426-28126706)
chr7 (144-419)||(28124599-28124878)
chr7 (144-419)||(4895525-4895803)
chr7 (200-323)||(37405559-37405682)
chr7 (299-419)||(28014285-28014406)
chr7 (146-232)||(44962228-44962314)
chr7 (200-417)||(25471785-25472003)
chr7 (322-408)||(8405628-8405715)
chr7 (265-340)||(4880267-4880343)
chr7 (250-312)||(36989570-36989632)
chr7 (257-333)||(4571066-4571144)
chr7 (144-189)||(6322931-6322976)
[»] chr6 (23 HSPs)
chr6 (143-419)||(5376817-5377097)
chr6 (144-419)||(5378673-5378952)
chr6 (146-419)||(19645312-19645586)
chr6 (143-411)||(1088673-1088946)
chr6 (146-358)||(15149112-15149331)
chr6 (200-323)||(15868391-15868514)
chr6 (200-323)||(33866098-33866221)
chr6 (200-323)||(15866579-15866702)
chr6 (200-323)||(33869245-33869368)
chr6 (228-309)||(9415095-9415176)
chr6 (144-214)||(9414962-9415032)
chr6 (200-328)||(14611083-14611210)
chr6 (200-327)||(28884359-28884487)
chr6 (200-271)||(32079909-32079980)
chr6 (144-201)||(9415050-9415107)
chr6 (303-413)||(8915570-8915681)
chr6 (303-408)||(20985831-20985937)
chr6 (252-328)||(14618975-14619050)
chr6 (200-260)||(14620510-14620570)
chr6 (144-184)||(30376225-30376265)
chr6 (339-399)||(24544757-24544818)
chr6 (144-180)||(30371853-30371889)
chr6 (380-408)||(31528957-31528985)
[»] chr1 (16 HSPs)
chr1 (151-419)||(17449261-17449529)
chr1 (144-324)||(16808687-16808869)
chr1 (200-323)||(9312028-9312151)
chr1 (200-323)||(3282800-3282923)
chr1 (200-323)||(3284501-3284624)
chr1 (200-323)||(9310411-9310534)
chr1 (144-251)||(48940619-48940726)
chr1 (200-292)||(37664695-37664787)
chr1 (200-292)||(37674417-37674509)
chr1 (200-292)||(37702185-37702277)
chr1 (247-406)||(48941646-48941810)
chr1 (200-300)||(902076-902175)
chr1 (200-260)||(5924946-5925006)
chr1 (282-366)||(5924852-5924935)
chr1 (144-183)||(51020570-51020609)
chr1 (377-419)||(16808590-16808632)
[»] scaffold0057 (1 HSPs)
scaffold0057 (200-397)||(58785-58982)
[»] scaffold0251 (1 HSPs)
scaffold0251 (200-323)||(6225-6348)
[»] chr5 (4 HSPs)
chr5 (200-323)||(39787168-39787291)
chr5 (200-374)||(25076173-25076348)
chr5 (200-374)||(25134142-25134317)
chr5 (256-300)||(6569888-6569932)
[»] scaffold0006 (1 HSPs)
scaffold0006 (200-375)||(39144-39318)
[»] scaffold0425 (1 HSPs)
scaffold0425 (17-108)||(12214-12305)
[»] scaffold0189 (1 HSPs)
scaffold0189 (318-419)||(19063-19164)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 45 - 419
Target Start/End: Original strand, 6789464 - 6789839
Alignment:
Q  45 atcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatctttatgtaaaggcatgtaaatcgagacttttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789464 atcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatctttatgtaaaggcatgtaaatcgagacttttt 6789563  T
Q  145 gttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagctt 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||  |||||||||| ||||||||||||||||||||||||||    
T  6789564 gttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatcatgtatagttagtggataagtgaactagagttagtagctt 6789663  T
Q  245 ggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctaca 344  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||    
T  6789664 ggttagaagttagttagagttagttactcaaactaatctctatatataggaatactattgtactcattcactatcttttttcaatctattca-ttctaca 6789762  T
Q  345 atgagttactttgaatatctccctcatgagt-ttcttatgcttgctatc-ttgcttacatctatgacttttctccct 419  Q
    ||||||| || ||| |||||||| |||||||  |||||||||||||||| ||||||||||||||||||| |||||||    
T  6789763 atgagtttctatgagtatctcccacatgagtactcttatgcttgctatctttgcttacatctatgacttctctccct 6789839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 144 - 419
Target Start/End: Complemental strand, 17403073 - 17402794
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  17403073 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 17402974  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcatttc 340  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17402973 tttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttc 17402874  T
Q  341 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||| || ||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  17402873 tacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 17402794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 146 - 419
Target Start/End: Original strand, 1139958 - 1140220
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| ||||||||||||||| || ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||            |    
T  1139958 ttaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactag------------g 1140045  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 345  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1140046 gttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaa 1140145  T
Q  346 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1140146 tgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 1140220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 6550327 - 6550429
Alignment:
Q  12 actcacttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaat 111  Q
    ||||| ||||||| ||| |||||||||||||| ||  |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  6550327 actcatttttggtaatacaaattgcatcacattattctttccctagttttacattcaaacatagttaagataacatataattatctcactggcacaaaat 6550426  T
Q  112 ctt 114  Q
    |||    
T  6550427 ctt 6550429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6849109 - 6849211
Alignment:
Q  17 cttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatcttta 116  Q
    |||||||| |||||||||||||||  ||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||| | ||||    
T  6849109 cttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggcacaaatttttta 6849208  T
Q  117 tgt 119  Q
    |||    
T  6849209 tgt 6849211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 6527528 - 6527615
Alignment:
Q  17 cttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggc 104  Q
    ||||| || |||||||||||||||  |||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  6527528 cttttagtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggc 6527615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 6938556 - 6938429
Alignment:
Q  17 cttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatcttta 116  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||| |||||||||    ||| |||||||||||| |||||||||||||||||||||||    
T  6938556 cttttggtaatataaattgcatcacatcatctt--ccctatttttagattcaaacattattaaaataacatataatcatctcactggcacaaaatcttta 6938459  T
Q  117 tgt-aaaggcatgtaa-atcgagacttttt 144  Q
    ||| |||||| | ||| |||||||||||||    
T  6938458 tgtgaaaggcttttaatatcgagacttttt 6938429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 6558852 - 6558940
Alignment:
Q  12 actcacttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcac 100  Q
    |||| |||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||| |  ||||||||||||||||||||||||    
T  6558852 actctcttttggtaatataaattgcaacacatcatctcttccctagttttaaattcaaacataattaagataacatataattatctcac 6558940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 6797236 - 6797326
Alignment:
Q  18 ttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaa 108  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||| |||||| || |  |||||||||| ||||||||||||||| |||||    
T  6797236 ttttggtaatataaattgcatcacatcaacttttccctatttttaaattcaatcataattaagataacacataattatctcactgacacaa 6797326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 333
Target Start/End: Original strand, 20302625 - 20302760
Alignment:
Q  200 taatcaactatagtt-agttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaaca 298  Q
    |||| |||||||||| |||||| | || ||||||| ||||||| ||||||| |||| ||||| || | |||| ||||||||||||||||||||| |||||    
T  20302625 taataaactatagtttagttgaaaggttaactagacttagtagattggtta-aagtaagttatagttggttattcaaactaatctctatatataagaaca 20302723  T
Q  299 ct-attgtactcatt--cattatcttttatcaatctat 333  Q
    || || |||| ||||  ||||||||||||| |||||||    
T  20302724 ctcatcgtac-catttccattatcttttataaatctat 20302760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 20327167 - 20327259
Alignment:
Q  200 taatcaactatagtt-agttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 292  Q
    |||| |||||||||| |||||| | || ||||||| ||||||||||||||| |||| ||||| || | ||||||||||||||||||| ||||||    
T  20327167 taataaactatagtttagttgaaaggttaactagacttagtagcttggtta-aagtaagttatagttggttactcaaactaatctctctatata 20327259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 6785697 - 6785761
Alignment:
Q  27 tataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataa 91  Q
    |||||||||| |||||||||| ||||||||| ||||| |||||||| |  |||||||||||||||    
T  6785697 tataaattgcttcacatcatcctttccctagctttacgttcaaacataattaagataacatataa 6785761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 9720624 - 9720677
Alignment:
Q  18 ttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaac 71  Q
    ||||||| |||||||| ||||| |||||| ||||||||||| |||||| |||||    
T  9720624 ttttggtaatataaatagcatcgcatcatattttccctagtgttacatccaaac 9720677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 41874441 - 41874497
Alignment:
Q  243 ttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacact 300  Q
    |||||||  |||||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  41874441 ttggttaagagttagttagagttagttacacaa-ctaaactctatatataggaacact 41874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 142 - 419
Target Start/End: Original strand, 7040302 - 7040580
Alignment:
Q  142 tttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  7040302 tttgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtag 7040401  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7040402 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttct 7040501  T
Q  342 acaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  7040502 acaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 7040580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 144 - 419
Target Start/End: Complemental strand, 23564963 - 23564687
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagct 243  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23564963 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagct 23564864  T
Q  244 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23564863 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 23564764  T
Q  344 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  23564763 aatgagttactttgagtatctccctcatgagtactcttatgcttgctattttgcttacatctatgacttttctccct 23564687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 141 - 419
Target Start/End: Original strand, 18656048 - 18656327
Alignment:
Q  141 ttttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagta 240  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  18656048 ttttgttaaaatagccggaagttatgtgaagttagttaaggtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagta 18656147  T
Q  241 gcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttc 340  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  18656148 gcttagttagaagttagttagagttagttactcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttc 18656247  T
Q  341 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  18656248 tacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 18656327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 52520542 - 52520821
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  52520542 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 52520641  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcattt 339  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||    
T  52520642 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttcattt 52520741  T
Q  340 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    | |  |||  |  || ||| |||||||| |||||||  ||||||||||||| |||| |||||||||||||  |||||||||    
T  52520742 c-aatatggatctctatgagtatctcccacatgagtactcttatgcttgctctctttcttacatctatgatctttctccct 52520821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 142 - 419
Target Start/End: Original strand, 52518698 - 52518979
Alignment:
Q  142 tttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||    
T  52518698 tttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagt 52518797  T
Q  240 agcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcat 337  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||| ||| | ||||     
T  52518798 agtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactgttgtactcaatcatcatcttttaatcaaatattttca- 52518896  T
Q  338 ttctacaatgagttactttgaatatctccctcatgagtt-tcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||| |  |||  |  || ||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  52518897 ttccaatatggatctctatgagtatctcccacatgagttctcttatgcttgctctcttgcttacatctatgatctttctccct 52518979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 182 - 417
Target Start/End: Complemental strand, 23566599 - 23566383
Alignment:
Q  182 tagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaat 281  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23566599 tagttagactagagttagtaatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaat 23566500  T
Q  282 ctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttctt 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||| ||||||||||||| ||  ||||    
T  23566499 ctctatatataggaacactattgtactcattcattatcttttatcaatc--------------------tactttgagtatctccctcatgggtactctt 23566420  T
Q  381 atgcttgctatcttgcttacatctatgacttttctcc 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  23566419 atgcttgctatcttgcttacatctatgacttttctcc 23566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 3529379 - 3529251
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3529379 taatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3529280  T
Q  300 tattgtactcattcattatcttttatcaa 328  Q
    |||||||||||||||||||||||||||||    
T  3529279 tattgtactcattcattatcttttatcaa 3529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 23985773 - 23985901
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  23985773 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatataggaacac 23985872  T
Q  300 tattgtactcattcattatcttttatcaa 328  Q
    |||||||||||||||  ||||||||||||    
T  23985873 tattgtactcattcaccatcttttatcaa 23985901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 227 - 389
Target Start/End: Original strand, 54296454 - 54296617
Alignment:
Q  227 aactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-at 325  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatgatcttttaat 54296553  T
Q  326 caatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgct 389  Q
    ||||| |||||||| || |||||||| || ||| |||||||||||| |||  |||||||||||||    
T  54296554 caatcaattcattt-tataatgagtttctatgagtatctccctcatcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 3274729 - 3274538
Alignment:
Q  143 ttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagc 242  Q
    ||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||| |||||||||| || ||| ||||||||| ||    
T  3274729 ttgttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaactataattagttgataggtaaacaagagttagtggc 3274630  T
Q  243 ttggttagaagttagttagaggtagttactcaaactaatctctatatat-aggaacactattgtactcattcattatcttttatcaatctat 333  Q
    ||| ||||||||||||||||| || ||||||||| |||| ||||||||| |  | ||  || ||| |||||||| |||||||||||||||||    
T  3274629 ttgattagaagttagttagagttaattactcaaattaatttctatatataaacatcatcatggtaatcattcatcatcttttatcaatctat 3274538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 200 - 397
Target Start/End: Complemental strand, 52545333 - 52545137
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||    
T  52545333 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacac-aactaaactctatatataggaacac 52545235  T
Q  300 tattgtactca-ttcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |  |||| ||| || ||||||||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  ||||||||| ||| |||||||    
T  52545234 tcatgta-tcattttattatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 24807423 - 24807522
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || || ||||||||| ||||||||||  ||||||  |||| ||||||| | ||||||  |||||||||||||||||    
T  24807423 taatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttacac-aactaaaatctatatataggaacac 24807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 56074766 - 56074680
Alignment:
Q  312 tcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||| ||||||||||| |||||||||||||| || ||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  56074766 tcatcatcttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 18395866 - 18395816
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttag 250  Q
    ||||||||||||||||||||||| || ||||| ||||| ||| ||||||||    
T  18395866 taatcaactatagttagttgataggtaaactatagttaataggttggttag 18395816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 30224173 - 30224449
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagct 243  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30224173 tgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaactatagttagttgataagtaaactagagttagtagct 30224272  T
Q  244 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30224273 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 30224372  T
Q  344 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  30224373 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 30224449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 5567369 - 5567645
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagct 243  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||  | |||||||||||||||||    
T  5567369 tgttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaactatagttagttgatagctaaactagagttagtagct 5567468  T
Q  244 tggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctac 343  Q
    | |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5567469 tagttagaagttagttggagttagttactcaaactaatctctatatataggaaaactattgtactcattcatcatcttttatcaatctattcatttctac 5567568  T
Q  344 aatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5567569 aatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 5567645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 140 - 419
Target Start/End: Original strand, 25248951 - 25249225
Alignment:
Q  140 tttttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataa---gtgaactagagtt 236  Q
    |||||||||| |||||||||||||||||| |||||||||         ||||| |||||||||||||||||||||| |||||||   || ||||||||||    
T  25248951 tttttgttaagatagttggaagttatgtggagttagtta---------gactagagttagtaatcaactatagttaattgataataagtaaactagagtt 25249041  T
Q  237 agtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattca 336  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25249042 agtagcttggttagaagttagttaaaggtagttactcaaactaatctctatatataggaacactattgtactcattcatgatcttttatcaatctattca 25249141  T
Q  337 tttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||    
T  25249142 tttctacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgcttacatatatgacttttctccct 25249225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 146 - 419
Target Start/End: Complemental strand, 3375709 - 3375446
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  3375709 ttaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 3375610  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 345  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  3375609 gttagaagttagttagagttagttactcaaactaatctctatatataggaactctattgtacccattcattatctttt-tcaatctattcatttctacaa 3375511  T
Q  346 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||          |||||||| |||||||  |||| ||||||||||||| |||||||||||||| |||||||||    
T  3375510 tgag----------tatctcccacatgagtactcttttgcttgctatcttacttacatctatgacctttctccct 3375446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 158 - 417
Target Start/End: Original strand, 6428699 - 6428958
Alignment:
Q  158 gaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttag 257  Q
    ||||||||||| |||||||||  |||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||| |||||||    
T  6428699 gaagttatgtggagttagtta--gtagttagacaagagttagtaatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttag 6428796  T
Q  258 ttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcatttctacaatgagttactt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||  ||||||||||||| |||    
T  6428797 ttagaggtagttactcaaactaatctctatatataggaacactattgtaatcattcatcatcttttaatcaaatctattca-ctctacaatgagtttctt 6428895  T
Q  356 tgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctcc 417  Q
    ||| |||||| | |||||||  ||||||| |||||||||| |||||||||||||||| |||||    
T  6428896 tgagtatctctcacatgagtactcttatgtttgctatcttacttacatctatgacttctctcc 6428958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 146 - 397
Target Start/End: Complemental strand, 31032285 - 31032038
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  31032285 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 31032186  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 345  Q
    ||||||||    |||||| |||||||||||||||||||||||||||||||||| || |  |||||||||| |||||||||||||||||||| ||||| ||    
T  31032185 gttagaag----ttagagttagttactcaaactaatctctatatataggaacattactacactcattcatgatcttttatcaatctattca-ttctataa 31032091  T
Q  346 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  31032090 tgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 180 - 375
Target Start/End: Complemental strand, 3379366 - 3379172
Alignment:
Q  180 ggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaacta 279  Q
    ||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  3379366 ggtagttagactagagttagtaatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaacta 3379267  T
Q  280 atctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 375  Q
    ||||||||||  ||||| |||||||||||||||||| || ||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||    
T  3379266 atctctatattaaggaaaactattgtactcattcatcattttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagt 3379172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 36536035 - 36535924
Alignment:
Q  229 ctagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaa 328  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatagcaatactgttgtactcattcatcatcttttatcaa 36535936  T
Q  329 tctattcatttc 340  Q
    ||||||||||||    
T  36535935 tctattcatttc 36535924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 14935576 - 14935638
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttaga 262  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  14935576 taatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttaga 14935638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 5567729 - 5567676
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtt 197  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  5567729 tgttaaaatagctggaagttatgtgaagttagttaaggtagttagactagagtt 5567676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 36535905 - 36535863
Alignment:
Q  377 tcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  36535905 tcttatgcttgctatcttgcttacatctatgacctttctccct 36535863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 29274849 - 29274786
Alignment:
Q  230 tagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatatag 293  Q
    ||||||||||||||||||||   ||||||||||| || |||||| || |||||| |||||||||    
T  29274849 tagagttagtagcttggttacgggttagttagagttaattactccaattaatctttatatatag 29274786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 19473649 - 19473728
Alignment:
Q  318 tcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||| |||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  |||||| |||||| |||||||    
T  19473649 tcttctatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 19544574 - 19544653
Alignment:
Q  318 tcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||| |||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  |||||| |||||| |||||||    
T  19544574 tcttctatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 19588122 - 19588043
Alignment:
Q  318 tcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||| |||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  |||||| |||||| |||||||    
T  19588122 tcttctatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 143 - 419
Target Start/End: Original strand, 29758062 - 29758339
Alignment:
Q  143 ttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagc 242  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  29758062 ttgttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaactatagttagttgataagtaaactagagttagtagc 29758161  T
Q  243 ttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttcta 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29758162 ttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttcta 29758261  T
Q  343 caatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29758262 caatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 29758339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 8759207 - 8759121
Alignment:
Q  289 tataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 375  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  8759207 tataggaacactattgtactcattcatcatcttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagt 8759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 323
Target Start/End: Complemental strand, 20516227 - 20516053
Alignment:
Q  155 ttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttggttagaagt 254  Q
    |||||||||||||| |||||||||||||| ||| |||  |||||||||| |||||||||||||   ||||| | |||| |||||||||||||||| |||     
T  20516227 ttggaagttatgtgcagttagttaaggtaattaaactggagttagtaattaactatagttagt---taagttagctagggttagtagcttggttaaaaga 20516131  T
Q  255 tagttagag-----gtagttact----caaactaatctctatatataggaacactattgtactcattcattatctttt 323  Q
    |||||||||      ||||||||    ||||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  20516130 tagttagagttagtttagttactcaaacaaactaatttttatatataagaacactattgtactcattcattatttttt 20516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 8759269 - 8759203
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatag 212  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  8759269 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatag 8759203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 18612174 - 18612074
Alignment:
Q  299 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgc 396  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | |||||||||| |||||||  ||||||||||||| ||||||    
T  18612174 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgc 18612075  T
Q  397 t 397  Q
    |    
T  18612074 t 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 31155774 - 31155713
Alignment:
Q  140 tttttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagta 201  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||| |||| ||||||||    
T  31155774 tttttgttagaatagttggaagttatgcggagttagttaaggtagttaaactagagttagta 31155713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 18739671 - 18739730
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagtta 260  Q
    ||||||| ||||||||||||||| || |||||||||||||||  ||||||| |||||||||    
T  18739671 taatcaattatagttagttgatacgttaactagagttagtagtctggttag-agttagtta 18739730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 17149062 - 17149025
Alignment:
Q  301 attgtactcattcattatcttttatcaatctattcatt 338  Q
    |||||||||  |||||||||||||||||||||||||||    
T  17149062 attgtactctatcattatcttttatcaatctattcatt 17149025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 146 - 419
Target Start/End: Original strand, 44963108 - 44963382
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  44963108 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttg 44963207  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 345  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44963208 gttagaagttagttagagttagttactcaaattaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattcatttctacaa 44963307  T
Q  346 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||| || |||||| |||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||    
T  44963308 tgaatttctttgagtatctccctcatgaatactcttatgcttgctatcttacttacatctatgacttttctccct 44963382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 144 - 419
Target Start/End: Complemental strand, 20046787 - 20046507
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  20046787 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 20046688  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatc-ttttatcaatctattcattt 339  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20046687 tttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatctttttatcaatctattcattt 20046588  T
Q  340 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    |||||||||||| || ||| |||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  20046587 ctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctcgcttacatctatgacttttctccct 20046507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 143 - 419
Target Start/End: Complemental strand, 28126706 - 28126426
Alignment:
Q  143 ttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagta 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| ||||||||||||||    
T  28126706 ttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagta 28126607  T
Q  241 gcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcatt 338  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||| |    
T  28126606 gtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttca-t 28126508  T
Q  339 tctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    || |  |||  |  || ||| |||||||| |||||||  ||||||||||||| ||||||||||||||||||  |||||||||    
T  28126507 tccaatatggatctctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccct 28126426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 144 - 419
Target Start/End: Complemental strand, 28124878 - 28124599
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  28124878 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 28124779  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcattt 339  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||| ||    
T  28124778 tttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaaatattttca-tt 28124680  T
Q  340 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    | |  |||  |  || ||| |||||||| |||||||  ||||||||||||| ||||||||||||||||||  |||||||||    
T  28124679 ccaatatggatctctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccct 28124599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 4895525 - 4895803
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  4895525 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagattagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 4895624  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atcaatctattcatttc 340  Q
     ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||    
T  4895625 tttggttagaagttagttagagttatttactcaaactaatctctatatataggaacactattgtactcattcatcatcttttaatcaatatattca-ttc 4895723  T
Q  341 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
     |  |||  |  || ||| ||||||||  ||||||  ||||||| ||||| ||||||||||||||||||  |||||||||    
T  4895724 caatatggatctctatgagtatctcccagatgagtactcttatgtttgctctcttgcttacatctatgatctttctccct 4895803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 37405682 - 37405559
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37405682 taatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 37405583  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||| ||||||||    
T  37405582 tattgtactcattcactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 419
Target Start/End: Complemental strand, 28014406 - 28014285
Alignment:
Q  299 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag-tttcttatgcttgctatcttgct 397  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||   |||||||||||||||||||||    
T  28014406 ctattgtactcattattcatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgct 28014307  T
Q  398 tacatctatgacttttctccct 419  Q
    |||||||||||  |||||||||    
T  28014306 tacatctatgatctttctccct 28014285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 44962228 - 44962314
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactag 232  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  44962228 ttaacatagttggaagttatgtgaagttagttaaggtagttagacttgagtgagtaatcaactatagttagttgataagtaaactag 44962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 417
Target Start/End: Complemental strand, 25472003 - 25471785
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggtt-agaagttagttagaggtagttactcaaactaatctctatatatagga-ac 297  Q
    |||| |||||||||||||||||| || ||||||||||||||| |||||| || ||||||   ||| ||||||||| || | |   ||||| |||    ||    
T  25472003 taattaactatagttagttgataggttaactagagttagtaggttggttcagtagttagg--gagttagttactccaagtcactcctataaatacctcac 25471906  T
Q  298 actattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgc 396  Q
     ||||||||||||||  | ||||||||||||||||||||||| || |||||||| || | | |||||||| | ||| |  |||||||||||||||||| |    
T  25471905 tctattgtactcattattcatcttttatcaatctattcatttatataatgagtttctattagtatctcccacgtgaataatcttatgcttgctatctttc 25471806  T
Q  397 ttacatctatgacttttctcc 417  Q
    ||||||||||||  |||||||    
T  25471805 ttacatctatgatctttctcc 25471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 8405628 - 8405715
Alignment:
Q  322 ttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatga 408  Q
    ||||||||||| |||||||||||||||||| ||  || |||||||| ||||| |  ||||||||||||||| |||||||||| |||||    
T  8405628 ttatcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatga 8405715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 4880267 - 4880343
Alignment:
Q  265 tagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatct-attcatttc 340  Q
    ||||||||  || ||||||| ||||||| |||||| ||| ||||||||||| ||||||||||||||| |||||||||    
T  4880267 tagttacttcaattaatctcgatatatatgaacaccattatactcattcatcatcttttatcaatctaattcatttc 4880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 36989632 - 36989570
Alignment:
Q  250 gaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcatt 312  Q
    |||||||  ||||| |||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  36989632 gaagttatgtagagttagttattcaaactaatctctatatatagaaacattattgtagtcatt 36989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 4571066 - 4571144
Alignment:
Q  257 gttagaggtagttactcaaactaatctctatatataggaacact-attgtactca--ttcattatcttttatcaatctat 333  Q
    ||||||| || |||||  |||||||||||||||||| ||||||| |||||| |||  |||||||||||||||||||||||    
T  4571066 gttagagttaattacttcaactaatctctatatatatgaacactcattgta-tcattttcattatcttttatcaatctat 4571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 6322931 - 6322976
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttaga 189  Q
    |||||||||||||||||||||| || ||||| ||| ||||||||||    
T  6322931 tgttaaaatagttggaagttatatggagttaattacggtagttaga 6322976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 143 - 419
Target Start/End: Original strand, 5376817 - 5377097
Alignment:
Q  143 ttgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagta 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| ||||||||||||||    
T  5376817 ttgttaaaatagttggaagttatatgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagta 5376916  T
Q  241 gcttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcattt 339  Q
    | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5376917 gtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcattt 5377016  T
Q  340 ctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    |||||||||||| || ||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5377017 ctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 5377097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 5378673 - 5378952
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  5378673 tgttaaattagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 5378772  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctc-tatatataggaacactattgtactcattcattatcttttatcaatctattcatttc 340  Q
     ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5378773 tttggttagaagttagttagagttagttactcaaactaatctcttatatataggaacactattgtactcattcaatatcttttatcaatctattcatttc 5378872  T
Q  341 tacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||| || ||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5378873 tacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctccct 5378952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 146 - 419
Target Start/End: Complemental strand, 19645586 - 19645312
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| |||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  19645586 ttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagtaatcaattatagttagttgataagtaaactaaagttagtagcttg 19645487  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaa 345  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19645486 gttagaaattagtcagaggtagttactcaaactaatctctatatataagaacactattgtactcattcattatcttttatcaatctatttatttctacaa 19645387  T
Q  346 tgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||| || |||||| ||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||    
T  19645386 tgaatttctttgagtatctccctcatgagtactcttatacttgctatcttggttacatctatgacttttctccct 19645312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 143 - 411
Target Start/End: Complemental strand, 1088946 - 1088673
Alignment:
Q  143 ttgttaaaatagttggaagttatgtg----tagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttag 238  Q
    ||||||||||| ||||||||||||||    ||||||||||| ||||||| | || ||||||| |||||||||||||||||||||||| || |||||||||    
T  1088946 ttgttaaaatacttggaagttatgtgaagttagttagttaaagtagttaaattagagttagtgatcaactatagttagttgataagtaaattagagttag 1088847  T
Q  239 tagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatt 338  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  1088846 tagctttgttagaagttagttagagttagttagtcaaactaatctctatatataggaacactattgtactcattcatcatcttttatcaatctattca-t 1088748  T
Q  339 tctacaatgagttac-tttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgactt 411  Q
    |||| |||||||| | ||||| ||||||||  ||||||  ||||||| |||||||||||||||||||||||||||    
T  1088747 tctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttgcttacatctatgactt 1088673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 15149331 - 15149112
Alignment:
Q  146 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttg 245  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  15149331 ttaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaactatagttagttgataagtaaactagggtcagtagcttg 15149232  T
Q  246 gttagaagttagttagaggtagttactcaaactaatctctatatataggaac--ac-----tattgtactcattcattatcttttatcaatctattcatt 338  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||||||  ||     || ||||||||||||||||||||||||||||||||||||    
T  15149231 gttagaagttagttagagttagttactcaaattaatttctatatataggaacgtactgttgtactgtactcattcattatcttttatcaatctattcatt 15149132  T
Q  339 tctacaatgagttactttga 358  Q
    ||||||||||||| ||||||    
T  15149131 tctacaatgagtttctttga 15149112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 15868391 - 15868514
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15868391 taatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 15868490  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||||||||||||    
T  15868491 tattgtactcattcattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 33866098 - 33866221
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33866098 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctctatatataggaacac 33866197  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||| ||||||||    
T  33866198 tattgtactcattcactatctttt 33866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 15866579 - 15866702
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  15866579 taatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctctatatttaggaacac 15866678  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||||||||||||    
T  15866679 tattgtactcattcattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 33869245 - 33869368
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  33869245 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctctatatataggaacac 33869344  T
Q  300 tattgtactcattcattatctttt 323  Q
    |||||||| |||||| ||||||||    
T  33869345 tattgtacgcattcactatctttt 33869368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 9415095 - 9415176
Alignment:
Q  228 actagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactc 309  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatctctatatataagaacactattgtactc 9415176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 9414962 - 9415032
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagtt 214  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||    
T  9414962 tgttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaactatagtt 9415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 14611083 - 14611210
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||| ||||||||||| || || ||||||||||||||| ||||  ||||| |||||| ||||||| | |||||| ||||||||||||||||||    
T  14611083 taatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttacac-aactaaactctatatataggaacac 14611181  T
Q  300 tattgtactca-ttcattatcttttatcaa 328  Q
    |  |||| ||| ||||||||||||||||||    
T  14611182 tcgtgta-tcatttcattatcttttatcaa 14611210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 28884487 - 28884359
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||| |||||||||||||||| || |||||||||||| ||||| |||   |||| |||||||   ||||||  || |||||| |||||| |||||||     
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctttgtttatagttggttagagtcggttacttcaattaatctgtatataaaggaacaa 28884388  T
Q  300 t-attgtactcattcattatcttttatca 327  Q
    | |||||||||||||||||||||||||||    
T  28884387 tcattgtactcattcattatcttttatca 28884359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 32079909 - 32079980
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttac 271  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||  |||||||||||| |||||||    
T  32079909 taatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 9415050 - 9415107
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagta 201  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  9415050 tgttaaaatagttggaagttatgtggagttagttaaggaagttagactagagttagta 9415107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 8915570 - 8915681
Alignment:
Q  303 tgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagtt-tcttatgcttgctatcttgcttaca 401  Q
    |||||||||| |  ||||||||| |||||||||||||||| ||| |||| || ||| ||||| || || ||||  ||||||||||||| |||||||||||    
T  8915570 tgtactcatttagcatcttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttaca 8915669  T
Q  402 tctatgactttt 413  Q
    ||||||| ||||    
T  8915670 tctatgattttt 8915681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 20985937 - 20985831
Alignment:
Q  303 tgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttaca 401  Q
    ||||||||||   ||||||||||||||||||||||||||| ||||| ||  | | | ||||| || |||||||  |||||||||||| | |||| |||||    
T  20985937 tgtactcatttgctatcttttatcaatctattcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgcaaacttgattaca 20985838  T
Q  402 tctatga 408  Q
    |||||||    
T  20985837 tctatga 20985831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 14618975 - 14619050
Alignment:
Q  252 agttagttagaggtagttactcaaactaatctctatatataggaacactattgtactca-ttcattatcttttatcaa 328  Q
    |||||||||||| ||||||| ||| |||| |||||||||||||||||||  |||| ||| ||||||||||||||||||    
T  14618975 agttagttagagttagttacacaa-ctaaactctatatataggaacactcatgta-tcatttcattatcttttatcaa 14619050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 14620510 - 14620570
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagtta 260  Q
    |||||||||||  |||||||||| || ||||| |||||||||||||||||  |||||||||    
T  14620510 taatcaactatgattagttgataggtaaactacagttagtagcttggttaagagttagtta 14620570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 30376225 - 30376265
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtag 184  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  30376225 tgttaaaatagttggaagttatgtggagttagttaacgtag 30376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  339 tctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgctta 399  Q
    ||||| ||||||| || ||| ||||||||||||||||  ||||||||||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 30371853 - 30371889
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaag 180  Q
    ||||||||||||||||||||||||| | |||||||||    
T  30371853 tgttaaaatagttggaagttatgtgaaattagttaag 30371889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 31528957 - 31528985
Alignment:
Q  380 tatgcttgctatcttgcttacatctatga 408  Q
    |||||||||||||||||||||||||||||    
T  31528957 tatgcttgctatcttgcttacatctatga 31528985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 151 - 419
Target Start/End: Original strand, 17449261 - 17449529
Alignment:
Q  151 atagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagcttggttag 250  Q
    ||||||||||||||| || ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  17449261 atagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaactatagttagttgataagtaaactagggttagtagcttcgttag 17449360  T
Q  251 aagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagt 350  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  17449361 aagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-tcaatctattcatgtctacaatgaga 17449459  T
Q  351 tactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    | || ||| |||||||| |||||||  |||| |||||||||||||||||||||||||||| |||||||||    
T  17449460 ttctatgagtatctcccacatgagtactcttttgcttgctatcttgcttacatctatgacctttctccct 17449529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 324
Target Start/End: Complemental strand, 16808869 - 16808687
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagtta--gtaatcaactatagttagttgataagtgaactagagttagtag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  16808869 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagtaattgtaatcaactatagttagttgataagtaaactagagttagtag 16808770  T
Q  242 cttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttta 324  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16808769 tttggttagaagttagttagagttagttactcaaactaatctctatatatatgaacactattgtactcattcatcatctttta 16808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 9312028 - 9312151
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9312028 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 9312127  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||||||||||||    
T  9312128 tattgtactcattcattatctttt 9312151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 3282800 - 3282923
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3282800 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3282899  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||| ||||||||    
T  3282900 tattgtactcattcactatctttt 3282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 3284501 - 3284624
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3284501 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 3284600  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||| ||||||||    
T  3284601 tattgtactcattcactatctttt 3284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 9310411 - 9310534
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  9310411 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatctatatataggaacac 9310510  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||||||||||||    
T  9310511 tattgtactcattcattatctttt 9310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 48940619 - 48940726
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggtagttagactatagttagtaatcaactatagttagttgataagtgaactagagttagtagct 243  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  48940619 tgttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaactatagttagttgataagtaaactagagttagtagtt 48940718  T
Q  244 tggttaga 251  Q
    ||||||||    
T  48940719 tggttaga 48940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 37664787 - 37664695
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 292  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  37664787 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 37674509 - 37674417
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 292  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  37674509 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctctatatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 37702185 - 37702277
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatata 292  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  37702185 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatctctatatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 406
Target Start/End: Original strand, 48941646 - 48941810
Alignment:
Q  247 ttagaagttagttagaggtagttactcaaactaatctctatatataggaacactattgtactcattcattatctttt-atc-aatctattcatttc--ta 342  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||  |||||||||||||||||||| |||||||| ||| ||||||||||||||  ||    
T  48941646 ttagaagttagttagagttggttactcaaactaatctctatacatataaacactattgtactcattcagtatcttttaatcaaatctattcatttctata 48941745  T
Q  343 caatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgcttacatctat 406  Q
     ||||||||  | ||| |||||| | ||||| |  |||||| |||||| ||||||||||||||||    
T  48941746 taatgagtttatatgagtatctctcacatgaatactcttatacttgctctcttgcttacatctat 48941810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 902076 - 902175
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| | || ||| |||| |||||||||||||    
T  902076 taatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacac-aattaaactctctatataggaacac 902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 5925006 - 5924946
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagtta 260  Q
    ||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||    
T  5925006 taatcaactatagttagttgataggtaaattagagttagtagtttggttagaagttagtta 5924946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 5924935 - 5924852
Alignment:
Q  282 ctctatatataggaacactattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctcc 366  Q
    ||||||||||| |||||||  |||| |  ||||| |||||||||||||||||||| ||||| |||||||| || ||| |||||||    
T  5924935 ctctatatataagaacactcgtgtattatttcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcc 5924852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 51020570 - 51020609
Alignment:
Q  144 tgttaaaatagttggaagttatgtgtagttagttaaggta 183  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  51020570 tgttaaaatagttggaagttatgtggagttggttaaggta 51020609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 16808632 - 16808590
Alignment:
Q  377 tcttatgcttgctatcttgcttacatctatgacttttctccct 419  Q
    ||||||||||||| ||||||||||||||||||  |||||||||    
T  16808632 tcttatgcttgctctcttgcttacatctatgatctttctccct 16808590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 200 - 397
Target Start/End: Original strand, 58785 - 58982
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||||||||||||||||  || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  58785 taatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 58884  T
Q  300 tattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt-ttcttatgcttgctatcttgct 397  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||| |||||||| |||||||  ||||||||||||| |||||||    
T  58885 tattgtactcattcatcatcttttatcaatctattca-ttctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 58982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 6225 - 6348
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6225 taatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 6324  T
Q  300 tattgtactcattcattatctttt 323  Q
    ||||||||||||||| ||||||||    
T  6325 tattgtactcattcactatctttt 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 39787291 - 39787168
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39787291 taatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 39787192  T
Q  300 tattgtactcattcattatctttt 323  Q
    |||| |||||||||| | ||||||    
T  39787191 tattttactcattcactgtctttt 39787168  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 374
Target Start/End: Complemental strand, 25076348 - 25076173
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaaca- 298  Q
    ||||||||||||||||||||||| || ||||||| |||| |||   |||   ||||||||||||  ||| | || |||||||||||| |||||||||||     
T  25076348 taatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaacaa 25076249  T
Q  299 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag 374  Q
    | ||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||    
T  25076248 caattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25076173  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 374
Target Start/End: Complemental strand, 25134317 - 25134142
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaaca- 298  Q
    ||||||||||||||||||||||| || ||||||| |||| |||   |||   ||||||||||||  ||| | || |||||||||||| |||||||||||     
T  25134317 taatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaacaa 25134218  T
Q  299 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgag 374  Q
    | ||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||    
T  25134217 caattgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25134142  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 6569888 - 6569932
Alignment:
Q  256 agttagaggtagttactcaaactaatctctatatataggaacact 300  Q
    |||||||| |||||| || ||||||||||||||||||||||||||    
T  6569888 agttagagttagttagtccaactaatctctatatataggaacact 6569932  T

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Target: scaffold0006 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 39144 - 39318
Alignment:
Q  200 taatcaactatagttagttgataagtgaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| | |||||| ||||||||||||||||||    
T  39144 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacac-aactaaactctatatataggaacac 39242  T
Q  300 tattgtactca-ttcattatcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagt 375  Q
    |  |||| ||| ||||| |||||||||||||||||||||||||| ||||||||  | ||| |||||||| |||||||    
T  39243 tcatgta-tcatttcatcatcttttatcaatctattcatttctataatgagtttttatgagtatctcccacatgagt 39318  T

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Target: scaffold0425 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 12214 - 12305
Alignment:
Q  17 cttttggtgatataaattgcatcacatcatcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaa 108  Q
    |||||||| |||||||||||||||  ||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  12214 cttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggcacaa 12305  T

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Target: scaffold0189 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 19063 - 19164
Alignment:
Q  318 tcttttatcaatctattcatttctacaatgagttactttgaatatctccctcatgagtt-tcttatgcttgctatcttgcttacatctatgacttttctc 416  Q
    ||||||||||||||||||||| ||| |||||||| || |||  ||||||| |||||||  || ||||||| ||||||||||||||||||||| |||||||    
T  19063 tcttttatcaatctattcatt-ctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttacatctatgatttttctc 19161  T
Q  417 cct 419  Q
    |||    
T  19162 cct 19164  T

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