View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_15 (Length: 402)
Name: NF19145_low_15
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 11902188 - 11901807
Alignment:
| Q |
1 |
aagctacctagttccatcacaaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902188 |
aagctacctagttccatcactaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
11902089 |
T |
|
| Q |
101 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11902088 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgtcactctttgt |
11901989 |
T |
|
| Q |
201 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
11901988 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccggttggaaatatcgcatctagaacaagtcatg |
11901889 |
T |
|
| Q |
301 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901888 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
11901807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 11860369 - 11860747
Alignment:
| Q |
1 |
aagctacctagttccatcacaaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
100 |
Q |
| |
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||||| ||||||| ||| ||||| |||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||| |||| | ||| |
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| T |
11860369 |
aagcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaagacatggacgatttga |
11860468 |
T |
|
| Q |
101 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgt |
200 |
Q |
| |
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|||||||||| ||||||||| | ||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| |||| || || |
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| T |
11860469 |
gttgcctcaatcatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagcttacttctttgcaaacattgtcacttttcgt |
11860568 |
T |
|
| Q |
201 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatg |
300 |
Q |
| |
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|||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||||| || ||||| || ||||| |||||||||| | |
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| T |
11860569 |
agccagcaagaaacaag---tcacgggaggactaagatcactcacagatcttaacaatctgagaggccacttggaaatttctcatcttgaacaagtcaag |
11860665 |
T |
|
| Q |
301 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
382 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
11860666 |
ttctctccatcaaaggaagctgctaaagatgattttttgaaaaataagcaacacctcgagttcttgactctaagatgggatc |
11860747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 11828234 - 11828612
Alignment:
| Q |
1 |
aagctacctagttccatcacaaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
100 |
Q |
| |
|
||||| ||||||| ||| ||||| ||||||||||||||||| |||||| | || | |||||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
11828234 |
aagcttcctagttgcataacaaatcttatccacttgcaaacgttgaaactgtctcgatgtcatgtcctcaaagaattgccaaaagacatggatgatttga |
11828333 |
T |
|
| Q |
101 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgt |
200 |
Q |
| |
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||||||| |||||||||||| | || |||||| ||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||| |||| || || |
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| T |
11828334 |
gttgccttaaccatcttgacttagatggatgcttggatctaactcaaatgccaagtggaataagtaagctcacttctttgcaaacattgtcacttttcgt |
11828433 |
T |
|
| Q |
201 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatg |
300 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||| ||||| || ||||| |||||| |||||| ||| | |
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| T |
11828434 |
agccagcaagaaacaag---tcacgggaggactaagatcactcacagatcttaacaatctgaggggccacttggaaattatgcatctggaacaaatcaag |
11828530 |
T |
|
| Q |
301 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
382 |
Q |
| |
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||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11828531 |
ttctctccatcaaaagaagctgctaaagatgattttttgaaaaataaacaacaccttgagttcttgactctaagatgggatc |
11828612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 12039134 - 12039512
Alignment:
| Q |
1 |
aagctacctagttccatcacaaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
100 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||| |||||| | || |||||||| | ||||||||||||||||||||| |||||| ||| |
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|
| T |
12039134 |
aagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgccaaaagacatggatgatttga |
12039233 |
T |
|
| Q |
101 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgt |
200 |
Q |
| |
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|||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
12039234 |
gttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttacaaacattgtcactctttgt |
12039333 |
T |
|
| Q |
201 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatg |
300 |
Q |
| |
|
|| ||||||||| | | | || |||||||||||||||||||| ||||| ||||| |||||||| || | ||||| |||||||| |||||||||| | |
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| T |
12039334 |
agctagcaagaaatacg---ttacaggaggactaagagaactcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaag |
12039430 |
T |
|
| Q |
301 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
382 |
Q |
| |
|
||||| | ||| |||||| |||| ||||||||||| ||||||| ||| || |||||| ||| ||||||||||||||||||| |
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|
| T |
12039431 |
ttctcgcaatccaaggaaattgctaaagatgaatttttgaaaaacaaaaaataccttgggttcttgactctaagatgggatc |
12039512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 11732014 - 11732393
Alignment:
| Q |
1 |
aagctacctagttccatcacaaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgccaaaagacttggatggcctga |
100 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||||| |||||| | || | ||||| |||||||||||||||||||||||||| | | |||| |
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| T |
11732014 |
aagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtcatgtcctcaaggaattgccaaaagacttgaaggatctga |
11732113 |
T |
|
| Q |
101 |
gttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttacaaacattgccactctttgt |
200 |
Q |
| |
|
| |||||| ||||||| |||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||| |||||||||||| |||| || || |
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|
| T |
11732114 |
ctcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggatagataaactcacttccttacaaacattgtcacttttcgt |
11732213 |
T |
|
| Q |
201 |
ggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatg |
300 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||| |||||||| |||| ||||| || | | | | | ||||| | |||||| || ||||||| | |
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|
| T |
11732214 |
ggccagcaagaaacatgctgacaccggaggactaagggaactcacaaatctcaacaacctcaaggacaaactggaaattttgcatctggagcaagtcaag |
11732313 |
T |
|
| Q |
301 |
ttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatggga |
380 |
Q |
| |
|
||||||||||| || ||||| ||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
11732314 |
ttctctccatccaacgaagcggctaaagatgaatttgtgaaaaataaacaacacattcagcatttgactctaagatggga |
11732393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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