View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_17 (Length: 397)
Name: NF19145_low_17
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 30851153 - 30850794
Alignment:
| Q |
20 |
tatcaatgtggatcctctaataaataggtataagaaagtgtgatcctctaatagacattgttatgaaatgtcatagaaagatgcatgtgttgcaaagcag |
119 |
Q |
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| T |
30851153 |
tatcaatgtggatc-tctaataaataggtataagaaagtgtgatcctctaatagacattgttatgaaatgtcatagaaagatgcatgtgttgcaaagcag |
30851055 |
T |
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| Q |
120 |
aaaatggactaaaaacgtgtaatgaggctttgtggtagtttaggatggcggtggcgtctttcactttagacaaaactctccatcnnnnnnnngaaagaaa |
219 |
Q |
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| T |
30851054 |
aaaatggactaaaaacgtgt-atgaggctttgtggtagtttaggatggcggtggcgtctttcactttagacaaaactctccatcttttttttgaaagaaa |
30850956 |
T |
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| Q |
220 |
acaaaactttccatcttcttcatctctttaattttattttcttccaaaaaattaagtgaattaaaagaaaccgaatttctccggttgatttcattttttc |
319 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850955 |
acaaaactttctatcttcttcatctctttaattttattttcttcc-aaaaattaagtgaattaaaagaaaccgaatttctccggttgatttcattttttc |
30850857 |
T |
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| Q |
320 |
acgtgccaataaataatgctttggatcagagatgtccattacctctctaagtggagatgatct |
382 |
Q |
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| T |
30850856 |
acgtgccaataaataatgctttggatcagagatgtccattacctctctaagtggagatgatct |
30850794 |
T |
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