View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19145_low_20 (Length: 365)
Name: NF19145_low_20
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_20 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 23449312 - 23448976
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23449312 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23449213 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
23449212 |
gcaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcaagat |
23449113 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23449112 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattataggtaagtaaaac |
23449013 |
T |
|
| Q |
319 |
gaactatcctaagtaaatcaataaactatatcctatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23449012 |
gaactatcctaagtaaatcaataaactatatcctatg |
23448976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 23501075 - 23500739
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23501075 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaatatat |
23500976 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23500975 |
ggagcagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagat |
23500876 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23500875 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
23500776 |
T |
|
| Q |
319 |
gaactatcctaagtaaatcaataaactatatcctatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23500775 |
gaactatcctaagtaaatcaataaactatatcctatg |
23500739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 23353942 - 23353635
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353942 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23353843 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23353842 |
gtaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagat |
23353743 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
23353742 |
ttgaagcacaataatgacaagttggagaaatggaaagctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagtaaaac |
23353643 |
T |
|
| Q |
319 |
gaactatc |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
23353642 |
gaactatc |
23353635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 23406791 - 23406493
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23406791 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23406692 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23406691 |
ggaacagattgtgatacctgttttttacaacatagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgagat |
23406592 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaa |
317 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
23406591 |
ttaaagcacaataatgacaagttgaagaaatggaaagattctctcactgaggcagctaatttggttggttgggactctcaaaattataggcaagtaaaa |
23406493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 23465445 - 23465147
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23465445 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23465346 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
23465345 |
ggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaaacataagcgaaat |
23465246 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaa |
317 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||| | ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23465245 |
ttgaagcacaataacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaattataggtaagtaaaa |
23465147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 23441922 - 23441620
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23441922 |
aggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23441823 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
23441822 |
ggtacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagat |
23441723 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||| | ||||| |||||||||| ||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23441722 |
ttgaagagcaataatgacaagttacaggaatggaaagatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggtaaacaaaac |
23441623 |
T |
|
| Q |
319 |
gaa |
321 |
Q |
| |
|
||| |
|
|
| T |
23441622 |
gaa |
23441620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 23474454 - 23474152
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23474454 |
aggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
23474355 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
23474354 |
ggtacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagat |
23474255 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||| | ||||| |||||||||| ||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23474254 |
ttgaagagcaataatgacaagttacaggaatggaaagatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggtaaacaaaac |
23474155 |
T |
|
| Q |
319 |
gaa |
321 |
Q |
| |
|
||| |
|
|
| T |
23474154 |
gaa |
23474152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 23456076 - 23455768
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
23456076 |
aggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatctcaaaaagattctagaatgcaagcaatatat |
23455977 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
23455976 |
ggaacagatcgtgatacctattttttacaacattgatccatcacatgtgaggaagcaaaccgggagttacaagcaagcctttgcaaaacataagcaagat |
23455877 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||| ||||| |||||||||| |||||| |||||| |||||| |
|
|
| T |
23455876 |
ttgaagcacaataatgccaagttggagaaatggaaagcctctctcactgaggcagctaatttagttggatgggactctcaaaattataggtaaataaaac |
23455777 |
T |
|
| Q |
319 |
gaactatcc |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
23455776 |
aaactatcc |
23455768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 23435510 - 23435205
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
23435510 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaagcaatatat |
23435411 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23435410 |
ggaattgaccgtgatacctgttttttacaacat---tccatcacatgtgaggaagcagaccgggagttacaagcaagcatttgcaaaacataagcgagat |
23435314 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
23435313 |
ttgaagcacaataatgacaagttgcataaatggaaagccgctctcactgaggcagctaatttagttggttgggactctcaaaattataggtaagaaaaac |
23435214 |
T |
|
| Q |
319 |
gaactatcc |
327 |
Q |
| |
|
|| |||||| |
|
|
| T |
23435213 |
gacctatcc |
23435205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 23480799 - 23480495
Alignment:
| Q |
22 |
agtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |
|
|
| T |
23480799 |
agtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataagga |
23480700 |
T |
|
| Q |
122 |
acagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagatttg |
221 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
23480699 |
acacattgtgataccagttttttacaaaatagatccatcacatgtgaggaaccagaccgggagttacgagcaagcttttgcaaaacataagcgagatttg |
23480600 |
T |
|
| Q |
222 |
aagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaacgaa |
321 |
Q |
| |
|
||| ||||||||||||||| || ||||||||| ||||||| |||||||||| ||| | |||||||||| || ||||| |||||||||||||| |
|
|
| T |
23480599 |
aagagcaataatgacaagttacaggaatggaaagccgctctcactgaggcagctagtttaggcggttgggactttcaaaattttgagtaagtaaaacgaa |
23480500 |
T |
|
| Q |
322 |
ctatc |
326 |
Q |
| |
|
||||| |
|
|
| T |
23480499 |
ctatc |
23480495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 23388431 - 23388127
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
23388431 |
aggagtcacacgtgtcaattatcatcttctcagaaaattatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaatatat |
23388332 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| | ||||||| ||||||| |
|
|
| T |
23388331 |
gcaacagattgtgatacctgttttttacaacatagatccctcacatgtgaggaagcagactgggagttacgagcaagccttcacaaaacatatgcgagat |
23388232 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||| |||| |||||||||||| ||| ||||||||||||| || |||||||||||||| ||| |
|
|
| T |
23388231 |
ttgaagctcaataatgacaagttacaggaatggaaagccgctcttgccgaggcagctagtttagttggttgggactttcagaattacaggtaagttaaag |
23388132 |
T |
|
| Q |
319 |
gaact |
323 |
Q |
| |
|
||||| |
|
|
| T |
23388131 |
gaact |
23388127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 21088617 - 21088395
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
21088617 |
aggagtcacgtgtatctattgttatcttttcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttat |
21088518 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||| || |||| ||||||| |
|
|
| T |
21088517 |
ggaacagattgtgatacctgttttttacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagat |
21088418 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagtt |
241 |
Q |
| |
|
|| ||| || ||||||||||||| |
|
|
| T |
21088417 |
ttaaagaacgataatgacaagtt |
21088395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 317
Target Start/End: Complemental strand, 36025499 - 36025211
Alignment:
| Q |
29 |
tgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagatt |
128 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| ||||||| |
|
|
| T |
36025499 |
tgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagatt |
36025400 |
T |
|
| Q |
129 |
gtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagatttgaagcaca |
228 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||| |||| || ||||| | | ||| |||| |||||| | | |||||||||||| | |
|
|
| T |
36025399 |
gtgatacctgttttctatgaaatagatccatcacatgtgaggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcaga |
36025300 |
T |
|
| Q |
229 |
ataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaa |
317 |
Q |
| |
|
|| ||||| ||| | |||||||||||| |||||||||| || || ||||| | ||| ||| |||||| |||||||| |||| ||||| |
|
|
| T |
36025299 |
gcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattacaagtaaataaaa |
36025211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 36017411 - 36017156
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| || |||||||||| || ||||| ||||||||||| ||| |||||||| |||||||||||| || |
|
|
| T |
36017411 |
aggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgcttgaatgaactcgtcaagattctagaatgcaagaaagatca |
36017312 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||| ||||||||||| |||| ||| | ||||||||||||||||||||||| || | ||||||||||||||||||||||| || |||||| | || |
|
|
| T |
36017311 |
gggacaaattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagaataagcaaaat |
36017212 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagc |
274 |
Q |
| |
|
||||||||||| || ||||||||| |||||| ||||||| ||||||| || ||||| |
|
|
| T |
36017211 |
ttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcactgaagcagc |
36017156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 21087427 - 21087310
Alignment:
| Q |
21 |
gagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatga |
120 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
21087427 |
gagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaaatggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataagg |
21087328 |
T |
|
| Q |
121 |
aacagattgtgatacctg |
138 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
21087327 |
aacaaattgtgatacctg |
21087310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 311
Target Start/End: Complemental strand, 36004738 - 36004456
Alignment:
| Q |
29 |
tgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagatt |
128 |
Q |
| |
|
||||||||| |||||||||||| || |||| |||||||||||||||||||||||||| ||| |||||||| ||||| |||||| || | ||||||| |
|
|
| T |
36004738 |
tgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgtaagaaagatcagggacagatt |
36004639 |
T |
|
| Q |
129 |
gtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagatttgaagcaca |
228 |
Q |
| |
|
|||||||| |||| ||| | ||||||||||||||||||||||| || | || ||||| |||||||||||| |||||| |||||||||||||| | |
|
|
| T |
36004638 |
gtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaaatggaagttatgggcaagcctttgcaaaacatgcacgagatttgaagcaga |
36004539 |
T |
|
| Q |
229 |
ataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaa |
311 |
Q |
| |
|
| || || | ||| ||||||||||||||| |||| || || ||||| ||||| | || ||| |||||| ||||||||||||| |
|
|
| T |
36004538 |
acaaagaaatgttaaagaaatggaaagatgctctaactgaagcagccaatttagcagggtggcactctcaaaattacaggtaa |
36004456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 36034296 - 36034062
Alignment:
| Q |
40 |
tcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatat-atgaaacagattgtgatacctg |
138 |
Q |
| |
|
|||| |||||| || |||||||||| |||||||||| |||||||| ||| |||||||| |||||||||||| || ||| |||||||||||||| |
|
|
| T |
36034296 |
tcatattctcaaaagactatgcttcttcaaaatggtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatggg-cagattgtgataccga |
36034198 |
T |
|
| Q |
139 |
ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagatttgaagcacaataatgacaa |
238 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||| || | ||||||||||||||||||||||| || ||||||| | ||||||||||||| || ||||| |
|
|
| T |
36034197 |
ttttctacgaaatagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaa |
36034098 |
T |
|
| Q |
239 |
gttgaagaaatggaaagattctctcaccgaggcagc |
274 |
Q |
| |
|
|||| |||||| ||||||| ||||||| || ||||| |
|
|
| T |
36034097 |
gttgcagaaatagaaagatgctctcactgaagcagc |
36034062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 36009784 - 36009673
Alignment:
| Q |
31 |
catctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagattgt |
130 |
Q |
| |
|
||||||| |||||||| ||| || | |||||||| |||||||||||||||||||| ||| || ||||| |||||||| ||| || || ||| ||||| |
|
|
| T |
36009784 |
catctatagtcatcttttcaaaagattatgcttcttcaaaatggtgcttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgt |
36009685 |
T |
|
| Q |
131 |
gatacctgtttt |
142 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36009684 |
gatacctgtttt |
36009673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 13619 - 13311
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13619 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaatatat |
13520 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
13519 |
ggaacagattgtgatacctgttttttacaacatagatccagcaaatgtgaggaagcagactggaagttaccagcaagcctttgcaaaacataagcgagat |
13420 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||| | ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13419 |
ttgaagcacaataacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaattataggtaagtaaaac |
13320 |
T |
|
| Q |
319 |
gaactatcc |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
13319 |
gaactatcc |
13311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 13272 - 13244
Alignment:
| Q |
327 |
ctaagtaaatcaataaactatatcctatg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13272 |
ctaagtaaatcaataaactatatcctatg |
13244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 9721 - 10029
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatat |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9721 |
aggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatat |
9820 |
T |
|
| Q |
119 |
gaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagat |
218 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |||||||| || ||||||| |||||||| || |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9821 |
ggaacagatggtgatacctgttttttacaacttagatccagcaaatgtgagaaagcagactggaagttacgagcaagcctttgaaaaacataagcgagat |
9920 |
T |
|
| Q |
219 |
ttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaac |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9921 |
ttgaagagcaataatgacaagttgaagaactggaaagccgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtaagtaaaac |
10020 |
T |
|
| Q |
319 |
gaactatcc |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
10021 |
gaactatcc |
10029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 3295 - 3533
Alignment:
| Q |
28 |
atgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagat |
127 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||| ||||||| |
|
|
| T |
3295 |
atgcatttactgttatcttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaatatatggaacagat |
3394 |
T |
|
| Q |
128 |
tgtgatacctgttttttacaacatagatccatcacatgtgaggaagca-gaccg----------ggagttacaagcaagcctttgcgaaacataagcgag |
216 |
Q |
| |
|
||| || ||||||||||| ||||||||||||| ||||||||| | || |||| || ||||||| | |||||| | ||||||| ||||| |
|
|
| T |
3395 |
tgtaatgtctgttttttacgacatagatccatcgcatgtgaggtaccaccaccgtaccatactaggtgttacaaaccagccttcgaaaaacataggcgag |
3494 |
T |
|
| Q |
217 |
atttgaagcacaataatgacaagttgaagaaatggaaag |
255 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3495 |
aactgaagcacaataatgacaagttgcagaaatggaaag |
3533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 12894684 - 12894987
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatat-a |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||| || | |
|
|
| T |
12894684 |
aggagtcatatgcatctattgtcatcttctcaatagactatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatca |
12894783 |
T |
|
| Q |
118 |
tgaaacagattgtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgaga |
217 |
Q |
| |
|
|| ||| ||||||||||||||||||||| | ||||||||||||||||||||||| || || ||||| |||| ||||||||||| ||||| ||| ||| |
|
|
| T |
12894784 |
tg-gacaaattgtgatacctgttttttacgaaatagatccatcacatgtgaggaatcaaacagggaggtacagtcaagcctttgcaaaacacgagcaaga |
12894882 |
T |
|
| Q |
218 |
tttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaattacaggtaagtaaaa |
317 |
Q |
| |
|
|||||||||| || || | ||| | |||||||||||| |||||| || ||||| ||||| | ||| ||| |||||| ||||||||||||| ||||| |
|
|
| T |
12894883 |
tttgaagcacggcaaagatatgttacaaaaatggaaagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaa |
12894982 |
T |
|
| Q |
318 |
cgaac |
322 |
Q |
| |
|
|||| |
|
|
| T |
12894983 |
tgaac |
12894987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 31159984 - 31159947
Alignment:
| Q |
43 |
tcttctcagaaaactatgcttcctcaaaatggtgcttg |
80 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
31159984 |
tcttctcaaaaaactatgcttcctcaacatggtgcttg |
31159947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 14639021 - 14638965
Alignment:
| Q |
32 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
88 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
14639021 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
14638965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 167611 - 167687
Alignment:
| Q |
19 |
aggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaag |
95 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
167611 |
aggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctcataatggtgcttgaatgagatcaaaaag |
167687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 16334736 - 16334975
Alignment:
| Q |
29 |
tgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagatt |
128 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| ||| |
|
|
| T |
16334736 |
tgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaatt |
16334835 |
T |
|
| Q |
129 |
gtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcgaaacataagcgagatttgaagcaca |
228 |
Q |
| |
|
|||||||| |||| || | ||||||||||| |||||||| | |||| ||||| ||| |||||||||||| || || || |||||| ||||| |
|
|
| T |
16334836 |
gtgataccaattttctatgaaatagatccatctcatgtgagatatcagattgggagctacgggcaagcctttgcaaagtatgagaagaatttgaggcaca |
16334935 |
T |
|
| Q |
229 |
ataatgacaagttgaagaaatggaaagattctctcaccga |
268 |
Q |
| |
|
| || ||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
16334936 |
agaaagacaacttgcaaaaatggaaagatgctctcaccga |
16334975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 16124915 - 16124742
Alignment:
| Q |
29 |
tgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagatt |
128 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| ||| |
|
|
| T |
16124915 |
tgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaatt |
16124816 |
T |
|
| Q |
129 |
gtgatacctgttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgc |
202 |
Q |
| |
|
|||||||| |||| || | ||||||||||| |||||||| || |||| ||||||||| |||||||||||| |
|
|
| T |
16124815 |
gtgataccaattttctatgaaatagatccatctcatgtgagaaatcagattgggagttacgggcaagcctttgc |
16124742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 16127068 - 16126928
Alignment:
| Q |
29 |
tgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgaaacagatt |
128 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| ||| |
|
|
| T |
16127068 |
tgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaatt |
16126969 |
T |
|
| Q |
129 |
gtgatacctgttttttacaacatagatccatcacatgtgag |
169 |
Q |
| |
|
|||||||| |||| || | ||||||||||| |||||||| |
|
|
| T |
16126968 |
gtgataccaattttctatgaaatagatccatctcatgtgag |
16126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 6097933 - 6097893
Alignment:
| Q |
45 |
ttctcagaaaactatgcttcctcaaaatggtgcttgaatga |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6097933 |
ttctcagaaaactatgcttcctcaaaatggtgtttggatga |
6097893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 11125567 - 11125512
Alignment:
| Q |
53 |
aaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgca |
108 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||| ||||||||| |||| |||| |
|
|
| T |
11125567 |
aaactatgcttcctcaacatggtgtttggatgagctaaaaaagattgttgagtgca |
11125512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 178271 - 178327
Alignment:
| Q |
32 |
atctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagct |
88 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
178271 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
178327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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