View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_21 (Length: 353)

Name: NF19145_low_21
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_21
NF19145_low_21
[»] chr6 (16 HSPs)
chr6 (13-209)||(16731125-16731321)
chr6 (13-201)||(20189609-20189797)
chr6 (13-201)||(22146194-22146382)
chr6 (209-337)||(20189370-20189499)
chr6 (209-337)||(22146492-22146621)
chr6 (205-327)||(9313736-9313858)
chr6 (205-327)||(28117885-28118000)
chr6 (27-201)||(35027311-35027485)
chr6 (257-333)||(16731443-16731519)
chr6 (128-201)||(12746673-12746746)
chr6 (128-201)||(28117707-28117780)
chr6 (125-204)||(7560350-7560429)
chr6 (128-201)||(2330497-2330570)
chr6 (128-201)||(5618487-5618560)
chr6 (128-201)||(9313963-9314036)
chr6 (125-201)||(31123294-31123370)
[»] chr3 (13 HSPs)
chr3 (13-200)||(36037141-36037328)
chr3 (205-337)||(36036896-36037028)
chr3 (125-204)||(18551533-18551612)
chr3 (125-205)||(20536751-20536831)
chr3 (27-201)||(28327210-28327384)
chr3 (27-201)||(28330535-28330709)
chr3 (128-201)||(18883081-18883154)
chr3 (128-201)||(19868850-19868923)
chr3 (28-201)||(27054638-27054811)
chr3 (128-201)||(42354589-42354662)
chr3 (128-201)||(4250253-4250326)
chr3 (128-201)||(9154683-9154756)
chr3 (27-95)||(3305616-3305684)
[»] chr7 (11 HSPs)
chr7 (27-209)||(26808900-26809082)
chr7 (205-327)||(22083394-22083516)
chr7 (14-117)||(6214517-6214620)
chr7 (205-282)||(6214371-6214448)
chr7 (27-201)||(43548959-43549133)
chr7 (27-201)||(12803443-12803616)
chr7 (27-201)||(44017970-44018144)
chr7 (128-201)||(3541346-3541419)
chr7 (125-204)||(17601548-17601627)
chr7 (27-201)||(6964053-6964227)
chr7 (128-201)||(38431260-38431333)
[»] chr8 (7 HSPs)
chr8 (32-209)||(587084-587261)
chr8 (32-209)||(626661-626838)
chr8 (205-337)||(587359-587491)
chr8 (205-337)||(626431-626563)
chr8 (22-201)||(9466889-9467068)
chr8 (128-201)||(31981216-31981289)
chr8 (27-62)||(13331855-13331890)
[»] chr4 (12 HSPs)
chr4 (13-153)||(24605440-24605580)
chr4 (205-333)||(7394816-7394944)
chr4 (125-209)||(7395041-7395125)
chr4 (205-333)||(24605192-24605320)
chr4 (91-143)||(24605386-24605438)
chr4 (27-113)||(7395120-7395205)
chr4 (125-204)||(23653148-23653227)
chr4 (125-204)||(11560678-11560757)
chr4 (27-197)||(26703673-26703843)
chr4 (128-201)||(11702765-11702838)
chr4 (27-201)||(13978900-13979074)
chr4 (128-201)||(15851040-15851113)
[»] chr2 (5 HSPs)
chr2 (205-327)||(30719820-30719942)
chr2 (27-201)||(38316225-38316399)
chr2 (27-201)||(40677950-40678124)
chr2 (128-201)||(1506815-1506888)
chr2 (128-198)||(1503614-1503684)
[»] chr5 (11 HSPs)
chr5 (27-139)||(35432716-35432828)
chr5 (254-327)||(17944715-17944788)
chr5 (128-201)||(17944518-17944591)
chr5 (128-201)||(33921009-33921082)
chr5 (23-62)||(33321241-33321280)
chr5 (205-239)||(35432529-35432563)
chr5 (128-201)||(19686037-19686110)
chr5 (128-201)||(19689420-19689493)
chr5 (128-201)||(26337850-26337923)
chr5 (128-201)||(34652933-34653006)
chr5 (173-209)||(35432661-35432697)
[»] scaffold0134 (2 HSPs)
scaffold0134 (205-327)||(7283-7404)
scaffold0134 (128-201)||(7105-7178)
[»] chr1 (5 HSPs)
chr1 (27-201)||(23441462-23441636)
chr1 (130-201)||(3087903-3087974)
chr1 (27-201)||(18392159-18392333)
chr1 (22-62)||(3088048-3088088)
chr1 (27-95)||(33898092-33898160)
[»] scaffold0911 (1 HSPs)
scaffold0911 (128-201)||(4430-4503)
[»] scaffold0214 (2 HSPs)
scaffold0214 (128-201)||(13474-13547)
scaffold0214 (128-201)||(19923-19996)
[»] scaffold0043 (1 HSPs)
scaffold0043 (128-201)||(13459-13532)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 16731125 - 16731321
Alignment:
Q  13 aatataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattg 112  Q
    ||||||||| ||| ||||||||||| ||||  ||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  16731125 aatataatttagtctttattcataactattcttgcttgatgcttttcttaatatcgtgtgtatgactattaacactagcttctatcaattgcttgaattg 16731224  T
Q  113 aattttggtttcaattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagttaagag 209  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16731225 aatttaggtttcaattgactactaaccctagctattgaatcggacatagtaattatgattaactcaacatatgaaactagagataggaagttgagag 16731321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 20189797 - 20189609
Alignment:
Q  13 aatataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattg 112  Q
    ||||||||||||||||||||||||| ||||  | ||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  20189797 aatataattcagtatttattcataagtattcttacttaatgcttttcttaatatcgtgtgtatgactattaacactaacttctatcgattgcttgaattg 20189698  T
Q  113 aattttggtttcaattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||| ||||||||||||||||| |||||||| ||||||  ||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  20189697 aatttaggtttcaattgactacttaccctagcaattgaattggatataataattgtgattaactcaacatatgaaactacagataggaa 20189609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 22146194 - 22146382
Alignment:
Q  13 aatataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattg 112  Q
    ||||||||||||||||||||||||| ||||  | ||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  22146194 aatataattcagtatttattcataagtattcttacttaatgcttttcttaatatcgtgtgtatgactattaacactaacttctatcgattgcttgaattg 22146293  T
Q  113 aattttggtttcaattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||| ||||||||||||||||| |||||||| ||||||  ||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  22146294 aatttaggtttcaattgactacttaccctagcaattgaattggatataataattgtgattaactcaacatatgaaactacagataggaa 22146382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 20189499 - 20189370
Alignment:
Q  209 gattgatcaaagctaataa-gttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcgaaa 307  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||  |||||||| || | ||||||||||||||||||     
T  20189499 gattgatcaaagctattaaagttaatccgtcggaaatgctgaaattacatttagaacatagagaatctagctaccacagagaccaatagaggattcgaat 20189400  T
Q  308 gcttaatcatctgttttccacataatttcc 337  Q
     ||||||||||| ||||||| |||||||||    
T  20189399 acttaatcatctattttccatataatttcc 20189370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 22146492 - 22146621
Alignment:
Q  209 gattgatcaaagctaataa-gttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcgaaa 307  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||  |||||||| || | ||||||||||||||||||     
T  22146492 gattgatcaaagctattaaagttaatccgtcggaaatgctgaaattacatttagaacatagagaatctagctaccacagagaccaatagaggattcgaat 22146591  T
Q  308 gcttaatcatctgttttccacataatttcc 337  Q
     ||||||||||| ||||||| |||||||||    
T  22146592 acttaatcatctattttccatataatttcc 22146621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 9313858 - 9313736
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    ||||||||||||||||||||||||||||||| ||  |||  ||||| ||||||||||||  ||||||| ||||||||| || | ||||||||||||||||    
T  9313858 aagagattgatcaaagctaataagttaatccttcctaaaggctgaatttacattgagaatttagagaatttagctaccacagagaccaatagaggattcg 9313759  T
Q  305 aaagcttaatcatctgttttcca 327  Q
    ||||||||||||| |||||||||    
T  9313758 aaagcttaatcatatgttttcca 9313736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 28117885 - 28118000
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||| ||||||||||||| ||||||| ||||||||| || | ||||       |||||    
T  28117885 aagagattgatcaaagctaataagttaatccgtcgtaaaggctgaatttacattgagaacttagagaatttagctaccacagagacca-------attcg 28117977  T
Q  305 aaagcttaatcatctgttttcca 327  Q
    |||||||||||||||||||||||    
T  28117978 aaagcttaatcatctgttttcca 28118000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 35027485 - 35027311
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || |||||||||| ||||  |||||||| || ||  | | ||||||  || ||  |  |    
T  35027485 tttattcagaattatttgtgcttaatgcttttcttatgattgtttatatgactactaaccctagcttctttcaatcacataaattgatcttaggaattga 35027386  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  35027385 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 35027311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 16731443 - 16731519
Alignment:
Q  257 ttgagaacatagagaaattagctaccgcatataccaatagaggattcgaaagcttaatcatctgttttccacataat 333  Q
    |||||||| |||||||  |||||||| ||   ||||||||||||||| |||||||||||||||||||| || |||||    
T  16731443 ttgagaacctagagaatctagctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataat 16731519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 12746673 - 12746746
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | |  || ||||||||| || |||| |||||||||||| |||||||||||||    
T  12746673 tgactactaaccctagcttttaatcgtgaaatagtaattctgtttaattcaacatatgaacctagagataggaa 12746746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 28117707 - 28117780
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  28117707 tgactactaaccctagcttttaatcctgaaatagtaattttgtttaattcaacataggaacctagagataggaa 28117780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 7560429 - 7560350
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtt 204  Q
    |||||||| ||||||||  ||||| |  | || ||| ||||| |||||||||  ||||||||||||||||||||||||||    
T  7560429 aattgactcctaaccctgactattaattctgaaataataattctgattaactttacatatgaaactagagataggaagtt 7560350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 2330497 - 2330570
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| |  |||| |||||||| ||| |||||||||||||    
T  2330497 tgactactaaccctagcttttaatcctgaaatagtaattctatttaattcaacataggaacctagagataggaa 2330570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 5618560 - 5618487
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||| |||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  5618560 tgacttctaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 5618487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 9314036 - 9313963
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||| ||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  9314036 tgactactaaccatagctcttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 9313963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 31123294 - 31123370
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||  |||||||| || | || || ||||||||| || ||||||   ||||||||||||||||||||||    
T  31123294 aattgactactttccctagcttttaatcctgaaatagtaattgtgtttaactttgcatatgaaactagagataggaa 31123370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 36037328 - 36037141
Alignment:
Q  13 aatataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattg 112  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  36037328 aatataattcagtatttattcataattattcttgcttaatgcttttcataatatcgtgtgtatgattattaacactagcttctatcgattgcttgaattg 36037229  T
Q  113 aattttggtttcaattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagatagga 200  Q
    ||||| |||| ||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36037228 aatttaggttacaattgattactaatcctagctaatgaaccggacatagtaattgtgattaactcaacatatgaaactagagatagga 36037141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 36037028 - 36036896
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  |||||||| || | |||||||||||||||     
T  36037028 aagagattgatcaaagctaataagttaatccgtcggaaatgctgagattacattgagaacatagagaatctagctaccacagagaccaatagaggattca 36036929  T
Q  305 aaagcttaatcatctgttttccacataatttcc 337  Q
    |||||||||||| |||||||||| |||||||||    
T  36036928 aaagcttaatcacctgttttccatataatttcc 36036896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 18551533 - 18551612
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtt 204  Q
    |||||||||||||||||||||||| |||| || ||||| ||| || || |||  ||||||||||||||||||||||||||    
T  18551533 aattgactactaaccctagctattaaacctgaaatagtgattctgtttgactttacatatgaaactagagataggaagtt 18551612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 20536831 - 20536751
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtta 205  Q
    ||||||||| |||||||| || || | || || ||||||||| || ||||||  |||||||||||||||||||||||||||    
T  20536831 aattgactattaaccctatcttttaatcctgaaatagtaattctgtttaactttacatatgaaactagagataggaagtta 20536751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 28327210 - 28327384
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||   | ||  |  |    
T  28327210 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatgctaggaattga 28327309  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  28327310 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 28327384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 28330535 - 28330709
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||   | ||  |  |    
T  28330535 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatgctaggaattga 28330634  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  28330635 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 28330709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 18883081 - 18883154
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  18883081 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 18883154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19868850 - 19868923
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||| ||||||||||| || | || || |||||||||||| |||| |||||||| ||| |||||||||||||    
T  19868850 tgactattaaccctagcttttaatcctgaaatagtaattatgtttaattcaacataggaacctagagataggaa 19868923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 27054638 - 27054811
Alignment:
Q  28 ttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaat 127  Q
    ||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  || ||||| || ||  | | ||||||  || ||  | ||     
T  27054638 ttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctaacttctttcaatcacataaattgatcttaggaattaaa 27054737  T
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||| ||| ||| |||||||||||||    
T  27054738 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaatataggaacctagagataggaa 27054811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 42354662 - 42354589
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  42354662 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 42354589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 4250253 - 4250326
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | |  || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  4250253 tgactactaaccctagcttttaatcttgaaatagtaattctgtttaattcaacataggaacctagagataggaa 4250326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 9154683 - 9154756
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | |  || |||||||||||  |||| |||||||| ||| |||||||||||||    
T  9154683 tgactactaaccctagcttttaatcatgaaatagtaattatatttaattcaacataggaacctagagataggaa 9154756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 3305616 - 3305684
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttct 95  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  ||||||||    
T  3305616 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttct 3305684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 26809082 - 26808900
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  26809082 tttattcataattattcttgcttaatgcttttcttaatatcgtgtgtatgactaataacactaggttctatcgattgcttgaattgaatttaggtttcaa 26808983  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagttaagag 209  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  26808982 ttgactactaaccctagctattgaaccagacctagtaattgtgattaactcaacatatgaaactagagataggaagttgagag 26808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 22083516 - 22083394
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    |||||||||||||||| |||||||||||||||||| |||  ||||| ||||||||||||| ||||||| ||| ||||| || | | ||||||||||||||    
T  22083516 aagagattgatcaaagttaataagttaatccgtcgtaaaggctgaatttacattgagaacttagagaatttatctaccacagagatcaatagaggattcg 22083417  T
Q  305 aaagcttaatcatctgttttcca 327  Q
    ||||||||||||| |||||||||    
T  22083416 aaagcttaatcatttgttttcca 22083394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 6214620 - 6214517
Alignment:
Q  14 atataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattga 113  Q
    |||||||| |||  |||||||||||||||  ||||||||| ||||||||||||||| | | |||||||||||| |||||| |||||||||||||||||||    
T  6214620 atataatttagtcattattcataattattcttgcttaatgcttttcttaatatcgtttgtctgactattaacactagcttttatcgattgcttgaattga 6214521  T
Q  114 attt 117  Q
    ||||    
T  6214520 attt 6214517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 6214448 - 6214371
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctacc 282  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||  ||||||||    
T  6214448 aagagattgatcaaagctaataagttaatctgtcggaaaggctgaaattacattgagaacatagagaatctagctacc 6214371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 43548959 - 43549133
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||| || ||  |  |    
T  43548959 tttattcaaaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgaacttaggaattga 43549058  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||||||||||||||||| || | |  || |||||||||||| |||| |||||||| ||| ||| |||||||||    
T  43549059 ttgactactaaccctagcttttaatcatgaaatagtaattatgtttaattcaacataggaatctaaagataggaa 43549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 12803616 - 12803443
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || |||||||||| ||||  |||||||| || ||  | | ||||||  || ||  |  |    
T  12803616 tttattcagaattatttgtgcttaatgcttttcttatgattgtttatatgactactaaccctagcttctttcaatcacataaattgatcttaggaattga 12803517  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||| ||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  12803516 atgactact-accctagcttttaatcctgaaatagtaattttgtttaattcaacataggaacctagagataggaa 12803443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 44018144 - 44017970
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||   | ||  |  |    
T  44018144 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatgctaggaattga 44018045  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  44018044 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 44017970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 3541419 - 3541346
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  3541419 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 3541346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 17601548 - 17601627
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtt 204  Q
    |||||||||||| ||||||||||| |||| ||  || ||||| || ||  ||  ||||||||||||||||||||||||||    
T  17601548 aattgactactagccctagctattaaacctgaactaataattttgtttggctttacatatgaaactagagataggaagtt 17601627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 6964053 - 6964227
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| ||||||| |||||||||||||||||||  || || | |||||||| ||||  || ||||| || ||  | | ||||||  || ||  |  |    
T  6964053 tttattcagaattattggtgcttaatgtttttcttatgattgtttgtatgactactaaccctaccttctttcaatcacataaattgatcttaggaattga 6964152  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     ||||||||||||||| || || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  6964153 atgactactaaccctaacttttaatcctgaaatagtaattttgtttaattcaacataggaacctagagataggaa 6964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 38431260 - 38431333
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||||| |||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  38431260 tgactaccaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 38431333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 587084 - 587261
Alignment:
Q  32 tcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaattgac 131  Q
    |||||||||||| || |||||| |||| |||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  587084 tcataattatttttggttaatgctttttttaatatcgtgtttatcactattaacactaacttctatcgattgcttgaattgaatttaggtttcaactgac 587183  T
Q  132 tactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagttaagag 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  587184 tactaaccctagctattgaaccggacatagtaattgtgattaactcaacatataaaactagagataggaagttgagag 587261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 626838 - 626661
Alignment:
Q  32 tcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaattgac 131  Q
    |||||||||||| || |||||| |||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||| ||||    
T  626838 tcataattatttttgattaatgctttttttaatatcgtgtatatcactattaacactaacttctatcgattgcttgaattgaatttaggtttcaactgac 626739  T
Q  132 tactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagttaagag 209  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  626738 tactaaccctaactattgaaccggacatagtaattgtgattaactcaacatataaaactagagataggaagttgagag 626661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 337
Target Start/End: Original strand, 587359 - 587491
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||| |||  | |||| |||||||||||||    
T  587359 aagagattgatcaaagctaataagttaatccgtcggaaatgatgaaattacattgagaacatagagaatctagcaaccatagatacgaatagaggattcg 587458  T
Q  305 aaagcttaatcatctgttttccacataatttcc 337  Q
    ||||||| |||||||||||||||||||||||||    
T  587459 aaagcttgatcatctgttttccacataatttcc 587491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 626563 - 626431
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||| |||  | |||| |||||||||||||    
T  626563 aagagattgatcaaagctaataagttaatccgtcggaaatgatgaaattacattgagaacatagagaatctagcaaccatagatacgaatagaggattcg 626464  T
Q  305 aaagcttaatcatctgttttccacataatttcc 337  Q
    ||||||| |||||||||||||||||||||||||    
T  626463 aaagcttgatcatctgttttccacataatttcc 626431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 9466889 - 9467068
Alignment:
Q  22 cagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggt 121  Q
    |||| ||||||||||||||||||||||||||| ||||||||  || || | |||||||| ||||  || ||||| || ||  | | ||||||  || ||     
T  9466889 cagtctttattcataattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctaacttctttcaatcacataaattgatcttagga 9466988  T
Q  122 ttcaattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |  | |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  9466989 attgaatgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 9467068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 31981216 - 31981289
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  31981216 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 31981289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 13331855 - 13331890
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttctta 62  Q
    ||||||||||||||||||||||||||| ||||||||    
T  13331855 tttattcataattatttgtgcttaatgcttttctta 13331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 24605580 - 24605440
Alignment:
Q  13 aatataattcagtatttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattg 112  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||    
T  24605580 aatataattcagtatttattcataattattattgcttaatgcttttcttaatatcatgtgtatgactattaacactagcttctatcgattgtttgaattg 24605481  T
Q  113 aattttggtttcaattgactactaaccctagctattgaacc 153  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  24605480 aatttaggtttcaattgactactaaccctagctgttgaacc 24605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 7394944 - 7394816
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||  |   |||||||||||||||     
T  7394944 aagagattgatcaaagctaataagttaatccgtcggaaaggctgaaattacattgagaacatagagaatctagctaccaaagtgaccaatagaggattca 7394845  T
Q  305 aaagcttaatcatctgttttccacataat 333  Q
    |||||| ||||||||||||| || |||||    
T  7394844 aaagctgaatcatctgtttttcatataat 7394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 7395125 - 7395041
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagttaagag 209  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||    
T  7395125 aattgactactaaccctagctattgaaccggacatagtaaatgtgattaactcaacatatgacactagagataggaagttgagag 7395041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 24605320 - 24605192
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    |||||||||||||| |||||||||||||||||||| |||   || | ||||||||||||| ||||||| |||||||||  | | |||||||||||||| |    
T  24605320 aagagattgatcaatgctaataagttaatccgtcgtaaaggttggatttacattgagaacttagagaatttagctaccatagagaccaatagaggattag 24605221  T
Q  305 aaagcttaatcatctgttttccacataat 333  Q
    ||||| ||||||||||||||||| |||||    
T  24605220 aaagcataatcatctgttttccatataat 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 24605438 - 24605386
Alignment:
Q  91 cttctatcgattgcttgaattgaattttggtttcaattgactactaaccctag 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24605438 cttctatcgattgcttgaattgaatttaggtttcaattgactactaaccctag 24605386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 7395205 - 7395120
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattga 113  Q
    ||||||||||||||||  ||||| ||| ||||||||||||| ||| |||| ||||| ||| ||| ||||||||||||||||||||||    
T  7395205 tttattcataattattcttgcttgatgcttttcttaatatcatgtgtatggctatt-acactagtttctatcgattgcttgaattga 7395120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 23653148 - 23653227
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtt 204  Q
    ||||||||||||||||||||| || | || || ||||||||| || ||||||  ||||||||||||||||||| ||||||    
T  23653148 aattgactactaaccctagcttttaatcctgaaatagtaattctgtttaactttacatatgaaactagagatatgaagtt 23653227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 11560678 - 11560757
Alignment:
Q  125 aattgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaagtt 204  Q
    ||||||||| |||||||| || || | ||  | |||||||||||| ||||||  ||||||||||||||||||||||||||    
T  11560678 aattgactagtaaccctatcttttaatcctaaaatagtaattatgtttaactttacatatgaaactagagataggaagtt 11560757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 26703843 - 26703673
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||    | ||||||  || ||  |  |    
T  26703843 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaactctagcttctttcaatcatataaattgatcttaggaattga 26703744  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagata 197  Q
     |||||||||||||||||| || | || || |||||||||||| |||| |||||||| ||| |||||||||    
T  26703743 atgactactaaccctagcttttaatcctgaaatagtaattatgtttaattcaacataggaacctagagata 26703673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11702838 - 11702765
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  11702838 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 11702765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 13978900 - 13979074
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| |||||||   || || | |||||||| ||||  |||||||| || ||  | | ||||||  || ||  |  |    
T  13978900 tttattcagaattatttgtgcttaatgcttttcttctgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatcttaggaattga 13978999  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||| ||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  13979000 atgaccactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 13979074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 15851040 - 15851113
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||| ||||||||    
T  15851040 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagtgataggaa 15851113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 30719820 - 30719942
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    ||||||||||||||||||||||||||||| ||||| |||  ||||| ||||||||||||| ||||||| ||||||||| || | ||||||||||||||||    
T  30719820 aagagattgatcaaagctaataagttaatacgtcgtaaaggctgaatttacattgagaacttagagaatttagctaccacagagaccaatagaggattcg 30719919  T
Q  305 aaagcttaatcatctgttttcca 327  Q
    |||||||||||||||||||||||    
T  30719920 aaagcttaatcatctgttttcca 30719942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 38316399 - 38316225
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||||||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||  || ||  |  |    
T  38316399 tttattcagaattatttgtgcttaatgtttttcttatgattgtttgtatgactactaaccgtagcttctttcaatcacataaattgatcttaggaattga 38316300  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| |||  ||||||||||||    
T  38316299 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacttagagataggaa 38316225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 40678124 - 40677950
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||   | ||  |  |    
T  40678124 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatgctaggaattga 40678025  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  40678024 atgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 40677950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 1506888 - 1506815
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  1506888 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 1506815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 1503684 - 1503614
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagatag 198  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| ||||||||||    
T  1503684 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagatag 1503614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 35432828 - 35432716
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||| |||    
T  35432828 tttattcataattattcttgcttaatgcttttcttaatatcgtgtgtatgactattaacactagcttatatcgattgcttgaattgaatttaggttccaa 35432729  T
Q  127 ttgactactaacc 139  Q
    |||||||||||||    
T  35432728 ttgactactaacc 35432716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 17944715 - 17944788
Alignment:
Q  254 acattgagaacatagagaaattagctaccgcatataccaatagaggattcgaaagcttaatcatctgttttcca 327  Q
    ||||||||||| ||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  17944715 acattgagaacttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatcatctgttttcca 17944788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 17944518 - 17944591
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  17944518 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 17944591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 33921009 - 33921082
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  33921009 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 33921082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 33321280 - 33321241
Alignment:
Q  23 agtatttattcataattatttgtgcttaatgtttttctta 62  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  33321280 agtatttattcaaaattatttgtgcttaatgcttttctta 33321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 35432563 - 35432529
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcg 239  Q
    ||||||||||||||| |||||||||||||||||||    
T  35432563 aagagattgatcaaaactaataagttaatccgtcg 35432529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19686037 - 19686110
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||| ||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  19686037 tgactaataaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 19686110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19689420 - 19689493
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    ||||||||||||||| || || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  19689420 tgactactaaccctaacttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 19689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 26337850 - 26337923
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | |  || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  26337850 tgactactaaccctagcttttaatcatgaaatagtaattctgtttaattcaacataagaacctagagataggaa 26337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 34653006 - 34652933
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||| ||||| || |||| |||||||| ||| |||||||||||||    
T  34653006 tgactactaaccctagcttttaatcctgaaataataattttgtttaattcaacataggaacctagagataggaa 34652933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 35432697 - 35432661
Alignment:
Q  173 aactcaacatatgaaactagagataggaagttaagag 209  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  35432697 aactcaacatatgaaactagaaataggaagttgagag 35432661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 7283 - 7404
Alignment:
Q  205 aagagattgatcaaagctaataagttaatccgtcggaaatactgaaattacattgagaacatagagaaattagctaccgcatataccaatagaggattcg 304  Q
    |||||||||||||| |||||||||||||| ||| | ||   ||||  ||||||||||||| |||| || ||||||||| || | || |||||||||||||    
T  7283 aagagattgatcaacgctaataagttaattcgttgtaagggctgat-ttacattgagaacttagataatttagctaccacagagactaatagaggattcg 7381  T
Q  305 aaagcttaatcatctgttttcca 327  Q
    |||| ||||||||||||||||||    
T  7382 aaagtttaatcatctgttttcca 7404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 7105 - 7178
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  7105 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 7178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 23441636 - 23441462
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||   | ||  |  |    
T  23441636 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatgctaggaattga 23441537  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  23441536 atgactactaaccctagctttttatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 23441462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 3087974 - 3087903
Alignment:
Q  130 actactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  3087974 actactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 3087903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 18392159 - 18392333
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttctatcgattgcttgaattgaattttggtttcaa 126  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  |||||||| || ||  | | ||||||  || |   |  |    
T  18392159 tttattcagaattatttgtgcttaatggttttcttatgattgtttgtatgactactaaccctagcttctttcaatcacataaattgatcttagaaattga 18392258  T
Q  127 ttgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
     ||||||||||||||| || || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  18392259 atgactactaaccctaacttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 18392333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 3088088 - 3088048
Alignment:
Q  22 cagtatttattcataattatttgtgcttaatgtttttctta 62  Q
    |||| ||||||||||||||| ||||||||||| ||||||||    
T  3088088 cagtctttattcataattatctgtgcttaatgcttttctta 3088048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 33898092 - 33898160
Alignment:
Q  27 tttattcataattatttgtgcttaatgtttttcttaatatcgtgtatatgactattaacattagcttct 95  Q
    |||||||| |||||||||||||||||| ||||||||  || || | |||||||| ||||  ||||||||    
T  33898092 tttattcagaattatttgtgcttaatgcttttcttatgattgtttgtatgactactaaccctagcttct 33898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 4430 - 4503
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| || |||| |||||||| ||| |||||||||||||    
T  4430 tgactactaaccctagcttttaatcctgaaatagtaattctgtttaattcaacataggaacctagagataggaa 4503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 13474 - 13547
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | ||  | |||| ||||||| |||| |||||||| ||| |||||||||||||    
T  13474 tgactactaaccctagcttttaatcctcaaataggaattatgtttaattcaacataggaacctagagataggaa 13547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 19923 - 19996
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | |  || |||||||||||| |||| |||||||| ||| |||||| ||||||    
T  19923 tgactactaaccctagcttttaatcatgaaatagtaattatgtttaattcaacataggaacctagaggtaggaa 19996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 13459 - 13532
Alignment:
Q  128 tgactactaaccctagctattgaaccggacatagtaattatgattaactcaacatatgaaactagagataggaa 201  Q
    |||||||||||||||||| || | || || ||||||||| |  |||| |||||||| ||| |||||||||||||    
T  13459 tgactactaaccctagcttttaatcctgaaatagtaattctatttaattcaacataggaacctagagataggaa 13532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University