View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_26 (Length: 306)

Name: NF19145_low_26
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_26
NF19145_low_26
[»] chr6 (1 HSPs)
chr6 (58-288)||(1514719-1514962)
[»] chr5 (6 HSPs)
chr5 (65-198)||(43222111-43222244)
chr5 (37-196)||(35650275-35650434)
chr5 (71-196)||(9465734-9465859)
chr5 (81-198)||(14733556-14733672)
chr5 (80-125)||(43453590-43453635)
chr5 (128-196)||(3440888-3440956)
[»] chr2 (1 HSPs)
chr2 (32-196)||(373123-373287)
[»] chr7 (7 HSPs)
chr7 (65-196)||(27386897-27387028)
chr7 (64-198)||(675979-676113)
chr7 (37-198)||(20400009-20400166)
chr7 (137-198)||(37134378-37134439)
chr7 (148-198)||(31322032-31322082)
chr7 (157-198)||(1193657-1193698)
chr7 (158-210)||(23264006-23264058)
[»] chr3 (5 HSPs)
chr3 (135-198)||(43624333-43624396)
chr3 (143-199)||(36011001-36011057)
chr3 (159-196)||(778853-778890)
chr3 (103-196)||(28229361-28229454)
chr3 (134-186)||(24704885-24704937)
[»] chr8 (6 HSPs)
chr8 (134-196)||(11180238-11180300)
chr8 (32-198)||(21492725-21492893)
chr8 (75-198)||(15901446-15901569)
chr8 (128-186)||(16314002-16314060)
chr8 (153-185)||(28449846-28449878)
chr8 (103-203)||(29916407-29916506)
[»] chr4 (1 HSPs)
chr4 (64-196)||(3512283-3512415)
[»] chr1 (2 HSPs)
chr1 (65-199)||(24413242-24413372)
chr1 (128-189)||(5446779-5446840)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 288
Target Start/End: Original strand, 1514719 - 1514962
Alignment:
Q  58 gataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatca 157  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  1514719 gataacaacataaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatttcgttcataatta 1514818  T
Q  158 caatctccatttatttttataaatagagatgatctcaact-ccgatagaactacctcaac------------nnnnnnnnnctacctcaacaattaatta 244  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||                     |||||||||||||||||||    
T  1514819 caatctccatttatttttataaatagagatgatctcaactcccaataaaactacctcaacaattgcaccaaaaaaataaaactacctcaacaattaatta 1514918  T
Q  245 tgacatcttcatgcaaattcgcagtcttgctccatccgccaaaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1514919 tgacatcttcatgcaaattcgcagtcttgctccatccgccaaaa 1514962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 43222111 - 43222244
Alignment:
Q  65 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 164  Q
    ||||| ||||||||||||||||||||| || |||| || |||||||| |||| || || ||  ||||| ||||||||||||| |||||||| ||||||||    
T  43222111 acacataaaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctctttcataatgacaatctc 43222210  T
Q  165 catttatttttataaatagagatgatctcaactc 198  Q
    ||||||||||||||||| ||||  ||||||||||    
T  43222211 catttatttttataaatggagagtatctcaactc 43222244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 35650275 - 35650434
Alignment:
Q  37 tccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattg 136  Q
    ||||||||||  | ||||| |||||  |||| |||||| ||| |||||||||||| || ||| ||||||||||||||||  || || ||| ||||| |||    
T  35650275 tccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctattttttg 35650374  T
Q  137 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 196  Q
    |||||||||  ||  ||||  ||||||||||||||||| |||||| |||| |||||||||    
T  35650375 tgtctatcttttttctaattgcaatctccatttattttaataaatggagaggatctcaac 35650434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 9465734 - 9465859
Alignment:
Q  71 aaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccattta 170  Q
    |||| |||||||||||||||| || ||| |||||||||||| |||  |  || ||| |||||  |||||||||||| ||||||||  |||||||||||||    
T  9465734 aaaaatttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctctttcataatggcaatctccattta 9465833  T
Q  171 tttttataaatagagatgatctcaac 196  Q
    |||||||||||  ||| |||||||||    
T  9465834 tttttataaatgaagaggatctcaac 9465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 14733556 - 14733672
Alignment:
Q  81 aaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaa 180  Q
    ||||||||||  || |||| | |||||||||||||| || || | | ||||| ||||||||||||| ||| |||| ||||||| ||||||||||||||||    
T  14733556 aaataattaacgatggtgggactcatttaataataagacccaccgcttattt-ttgtgtctatctctttcctaatgacaatcttcatttatttttataaa 14733654  T
Q  181 tagagatgatctcaactc 198  Q
    | |||| |||||||||||    
T  14733655 tggagaggatctcaactc 14733672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 43453635 - 43453590
Alignment:
Q  80 aaaataattaatcatagtggaattcatttaataataaaactcatca 125  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||    
T  43453635 aaaataattaatgatagtggaatctatttaataataaaactcatca 43453590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 3440888 - 3440956
Alignment:
Q  128 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 196  Q
    ||||| ||||||||||||| ||| ||||   |||||||||||||||| |||||| |||| |||||||||    
T  3440888 tattttttgtgtctatctctttcctaattgtaatctccatttattttaataaatggagaggatctcaac 3440956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 373287 - 373123
Alignment:
Q  32 tcttatccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatt 131  Q
    |||| ||||||||||| | ||  ||||||||  | ||||||||| || |||||||||||| || |||| |||||||||||||||  || || ||| ||||    
T  373287 tcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatt 373188  T
Q  132 tattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 196  Q
    | ||||||||||||  ||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  373187 ttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatctcaac 373123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 27387028 - 27386897
Alignment:
Q  65 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 164  Q
    ||||||||||| |||||||||||||||  | || ||| ||||||||| |||  || || | | ||||| ||||||||||||| |||||||| ||||||||    
T  27387028 acacaaaaaatcttgaaaataattaatagtggtagaactcatttaatgataggacacaccgcttattttttgtgtctatctctttcataataacaatctc 27386929  T
Q  165 catttatttttataaatagagatgatctcaac 196  Q
    ||||||||||||||||| |||| |||||||||    
T  27386928 catttatttttataaatggagaggatctcaac 27386897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 676113 - 675979
Alignment:
Q  64 aacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatct 163  Q
    |||||||||||| ||||||||||||||| || |||  | ||||||||| |||  | ||| ||||||||| |||||| |||||| | |||||| ||||||     
T  676113 aacacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctcttacataatgacaatcg 676014  T
Q  164 ccatttatttttataaatagagatgatctcaactc 198  Q
     |||||||||||||||||||||| |||||||||||    
T  676013 tcatttatttttataaatagagaggatctcaactc 675979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 198
Target Start/End: Original strand, 20400009 - 20400166
Alignment:
Q  37 tccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattg 136  Q
    ||||||||||||| || || ||||||  ||| ||||||| || |||||||||||| || |||  | ||||||||| |||| || || |||  |||| |||    
T  20400009 tccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatttgttg 20400108  T
Q  137 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 198  Q
    |||||||||| |||||||| | |||    |||||||| ||||||| |||| |||||||||||    
T  20400109 tgtctatctctttcataatgaaaat----atttatttatataaatggagaggatctcaactc 20400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 37134378 - 37134439
Alignment:
Q  137 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 198  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  37134378 tgtctatctctatcataatgacaatctccgtttatttttataaatggagaggatctcaactc 37134439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 31322082 - 31322032
Alignment:
Q  148 ttcataatcacaatctccatttatttttataaatagagatgatctcaactc 198  Q
    |||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  31322082 ttcataatgacaatcttcatttatttttataaatggagaggatctcaactc 31322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 1193698 - 1193657
Alignment:
Q  157 acaatctccatttatttttataaatagagatgatctcaactc 198  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  1193698 acaatatccatttatttttataaatggagatgatcccaactc 1193657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 23264058 - 23264006
Alignment:
Q  158 caatctccatttatttttataaatagagatgatctcaactccgatagaactac 210  Q
    |||||||||||||||||||||||| || | ||||||||||  | |||||||||    
T  23264058 caatctccatttatttttataaatggataagatctcaacttagttagaactac 23264006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 43624396 - 43624333
Alignment:
Q  135 tgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 198  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43624396 tgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatctcaactc 43624333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 36011001 - 36011057
Alignment:
Q  143 tctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactcc 199  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  36011001 tctctttcataattacaatctccatttatttttataaattgagaggatctcaactcc 36011057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 778890 - 778853
Alignment:
Q  159 aatctccatttatttttataaatagagatgatctcaac 196  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  778890 aatctccatttatttttataaatggagaagatctcaac 778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 28229454 - 28229361
Alignment:
Q  103 tcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 196  Q
    ||||||||| |||  ||||| ||| ||||| |||||||||| || ||| ||||  ||  ||||||||||||| |||||| |||| |||||||||    
T  28229454 tcatttaatgataggactcaccacctattttttgtgtctatatctttcctaattgcacactccatttattttaataaatggagaggatctcaac 28229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 24704937 - 24704885
Alignment:
Q  134 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 186  Q
    |||| |||||||| |||||||  |||||||||| |||||||||||||| ||||    
T  24704937 ttgtatctatctctttcataacgacaatctccaattatttttataaatggaga 24704885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 11180300 - 11180238
Alignment:
Q  134 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 196  Q
    ||||||||||||| ||| |||  |||||||| |||||||||||||||| ||||||||||||||    
T  11180300 ttgtgtctatctctttcttaaagacaatctcaatttatttttataaatggagatgatctcaac 11180238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 21492725 - 21492893
Alignment:
Q  32 tcttatccatttcttctacttgaaaagataacaacaca-aaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatat 130  Q
    |||| ||||||||||| | ||| | ||||||  ||||| |||||| |||||||||| |||| || |||| |   |||||||||||  | ||| ||| |||    
T  21492725 tcttttccatttcttccatttggagagataaagacacacaaaaatcttgaaaataagtaatgatggtgggacctatttaataatagtattcaccacctat 21492824  T
Q  131 ttatt-gtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 198  Q
    || || ||||||||||| ||| ||||  ||||||||||||||||||||||||  | | |||||||||||    
T  21492825 ttttttgtgtctatctctttcctaatggcaatctccatttatttttataaatgaaaaagatctcaactc 21492893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 15901446 - 15901569
Alignment:
Q  75 ttttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttt 174  Q
    ||||||||||||||||| |||||   |  ||||||||||||  || ||  || ||||| |||| |||||||| ||||||||  |||||||||||||||||    
T  15901446 ttttgaaaataattaatgatagtaagacccatttaataataggacccacgacctattttttgtatctatctctttcataatggcaatctccatttatttt 15901545  T
Q  175 tataaatagagatgatctcaactc 198  Q
     ||||||  ||| ||||| |||||    
T  15901546 aataaatgaagaagatcttaactc 15901569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 16314002 - 16314060
Alignment:
Q  128 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 186  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| |||||| ||||    
T  16314002 tattttttgtatctatctctttcataatgacaatctccatttattttaataaatggaga 16314060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 28449878 - 28449846
Alignment:
Q  153 aatcacaatctccatttatttttataaatagag 185  Q
    ||||| |||||||||||||||||||||||||||    
T  28449878 aatcataatctccatttatttttataaatagag 28449846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 29916407 - 29916506
Alignment:
Q  103 tcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactccgat 202  Q
    |||||||||||||||||| | ||  ||||| || ||||||| || ||| ||||  ||||||  |||||||||||||||| |||| |||||| |||| |||    
T  29916407 tcatttaataataaaacttaccatctatttttt-tgtctatttctttcctaatatcaatctttatttatttttataaatggagaagatctcgactcggat 29916505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 3512415 - 3512283
Alignment:
Q  64 aacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaa-tc 162  Q
    ||||||||||| ||| |||||||||||| || |||||||||||||||| ||| ||| || ||| | ||| || |||||||||| ||| ||||  ||| ||    
T  3512415 aacacaaaaaaatttaaaaataattaataatggtggaattcatttaatgatagaacacaccac-ttttttttttgtctatctctttcttaattgcaattc 3512317  T
Q  163 tccatttatttttataaatagagatgatctcaac 196  Q
    ||||||||||   |||||| |||| |||||||||    
T  3512316 tccatttattaaaataaatggagaggatctcaac 3512283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 24413372 - 24413242
Alignment:
Q  65 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 164  Q
    ||||||||||| ||||||||||||||| || |||| |  |||||||| |||  || || ||   |||| |||||||||||    ||||||| ||||| |     
T  24413372 acacaaaaaatcttgaaaataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatc----tcataatgacaatata 24413277  T
Q  165 catttatttttataaatagagatgatctcaactcc 199  Q
    ||||||||||||||||| |||| ||||||||||||    
T  24413276 catttatttttataaatggagaggatctcaactcc 24413242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 5446779 - 5446840
Alignment:
Q  128 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatga 189  Q
    ||||| ||||||||||||| ||  | |  |||||||||||||||||||||||||||||||||    
T  5446779 tattttttgtgtctatctcttttcttacgacaatctccatttatttttataaatagagatga 5446840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University