View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_27 (Length: 299)

Name: NF19145_low_27
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_27
NF19145_low_27
[»] chr8 (13 HSPs)
chr8 (197-296)||(9225234-9225333)
chr8 (199-287)||(39617123-39617211)
chr8 (199-287)||(12497989-12498076)
chr8 (198-280)||(18380577-18380660)
chr8 (189-280)||(6421683-6421775)
chr8 (198-240)||(40560562-40560604)
chr8 (199-240)||(13276687-13276728)
chr8 (190-240)||(36892597-36892647)
chr8 (199-240)||(16431318-16431359)
chr8 (199-240)||(16881249-16881290)
chr8 (199-240)||(22516985-22517025)
chr8 (199-240)||(29073951-29073992)
chr8 (199-240)||(33444424-33444465)
[»] chr1 (19 HSPs)
chr1 (196-287)||(41400340-41400431)
chr1 (199-287)||(45542187-45542275)
chr1 (197-287)||(21327399-21327489)
chr1 (199-287)||(2028595-2028683)
chr1 (190-280)||(18415313-18415404)
chr1 (199-280)||(49008948-49009029)
chr1 (199-287)||(2844668-2844755)
chr1 (198-280)||(32518972-32519055)
chr1 (198-287)||(28640795-28640884)
chr1 (198-280)||(8111465-8111547)
chr1 (199-280)||(24780642-24780723)
chr1 (199-240)||(16661991-16662032)
chr1 (199-240)||(38297049-38297090)
chr1 (199-240)||(42438824-42438865)
chr1 (199-280)||(38980336-38980416)
chr1 (199-240)||(13499688-13499729)
chr1 (199-240)||(20279593-20279634)
chr1 (199-240)||(24452288-24452329)
chr1 (199-240)||(32052906-32052947)
[»] chr5 (17 HSPs)
chr5 (199-287)||(39560384-39560472)
chr5 (198-287)||(22493708-22493797)
chr5 (199-287)||(40835810-40835898)
chr5 (196-287)||(1593774-1593865)
chr5 (199-287)||(5807563-5807651)
chr5 (199-287)||(16485715-16485802)
chr5 (201-287)||(39005653-39005739)
chr5 (199-280)||(16483275-16483357)
chr5 (198-240)||(23104630-23104672)
chr5 (199-240)||(25340113-25340154)
chr5 (199-240)||(28907544-28907585)
chr5 (199-240)||(28943939-28943980)
chr5 (199-240)||(1209774-1209815)
chr5 (199-240)||(36786619-36786660)
chr5 (199-279)||(22383866-22383946)
chr5 (199-240)||(14459026-14459067)
chr5 (199-240)||(22718527-22718568)
[»] chr4 (12 HSPs)
chr4 (199-287)||(1244720-1244808)
chr4 (198-287)||(27019513-27019603)
chr4 (200-280)||(39296644-39296724)
chr4 (199-287)||(48430194-48430282)
chr4 (188-240)||(7512596-7512648)
chr4 (199-280)||(5948965-5949047)
chr4 (199-240)||(4946332-4946373)
chr4 (197-240)||(6248255-6248298)
chr4 (199-240)||(9765473-9765514)
chr4 (199-240)||(27074189-27074230)
chr4 (199-240)||(27154280-27154321)
chr4 (250-287)||(34807058-34807095)
[»] chr7 (13 HSPs)
chr7 (198-287)||(46809808-46809897)
chr7 (197-280)||(21949070-21949153)
chr7 (199-287)||(6617799-6617886)
chr7 (196-280)||(31078711-31078795)
chr7 (199-280)||(34637713-34637795)
chr7 (199-280)||(42054404-42054486)
chr7 (198-240)||(44042488-44042530)
chr7 (199-240)||(18781563-18781604)
chr7 (201-240)||(35508001-35508040)
chr7 (199-240)||(35116493-35116534)
chr7 (199-240)||(37313028-37313069)
chr7 (195-287)||(9174102-9174193)
chr7 (198-240)||(47397650-47397692)
[»] chr3 (13 HSPs)
chr3 (198-287)||(4061612-4061700)
chr3 (199-280)||(22403145-22403226)
chr3 (198-287)||(37969945-37970033)
chr3 (199-280)||(3335179-3335260)
chr3 (206-287)||(28413297-28413378)
chr3 (198-287)||(33950910-33950999)
chr3 (198-240)||(35347752-35347794)
chr3 (199-240)||(10118748-10118789)
chr3 (198-240)||(43847952-43847994)
chr3 (197-240)||(54613304-54613347)
chr3 (199-240)||(23305494-23305535)
chr3 (203-240)||(26702550-26702587)
chr3 (199-240)||(38187506-38187547)
[»] chr6 (7 HSPs)
chr6 (199-287)||(15152881-15152969)
chr6 (199-280)||(18898118-18898200)
chr6 (197-240)||(9699928-9699971)
chr6 (199-240)||(4268566-4268607)
chr6 (198-287)||(22515302-22515391)
chr6 (198-240)||(1424562-1424604)
chr6 (199-240)||(14183123-14183164)
[»] scaffold0088 (1 HSPs)
scaffold0088 (198-280)||(26463-26545)
[»] scaffold0009 (1 HSPs)
scaffold0009 (199-280)||(193875-193957)
[»] chr2 (7 HSPs)
chr2 (217-287)||(40268530-40268600)
chr2 (197-240)||(12253590-12253633)
chr2 (199-240)||(39118927-39118968)
chr2 (199-240)||(42839915-42839956)
chr2 (199-240)||(4647225-4647266)
chr2 (198-240)||(6909152-6909194)
chr2 (199-240)||(42227260-42227301)
[»] scaffold0007 (1 HSPs)
scaffold0007 (199-240)||(14249-14290)
[»] scaffold0047 (1 HSPs)
scaffold0047 (199-240)||(50606-50647)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 9225333 - 9225234
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatttttcgacat 296  Q
    ||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| || |||||    
T  9225333 taactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacataaataagttttttagatattatttgacat 9225234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 39617123 - 39617211
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||| ||| ||||||||||||||||||    
T  39617123 actagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacatatagataagttttttagatatt 39617211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 12497989 - 12498076
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| |||||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||    
T  12497989 actagtgtaacgccccgtgccaagcacgggatacattttatataaaacaatttaaca-ggtttacacataaataagttttttagatatt 12498076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 18380577 - 18380660
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||| |||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  18380577 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 18380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 6421775 - 6421683
Alignment:
Q  189 aatgtagataactagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||| ||        |||||||| |||||||||||||||||||||||    
T  6421775 aatgtatattactagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagagtttacacataaataagtttttt 6421683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 40560604 - 40560562
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  40560604 aactagtgtaacgccccgtgccaagcacgggatacattttatt 40560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 13276687 - 13276728
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  13276687 actagtgtaacgccccgtgccaagcacgggatacattttatt 13276728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 36892597 - 36892647
Alignment:
Q  190 atgtagataactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||| |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  36892597 atgtaaataactggtgtaacgccccgtgccaaacacgggatacattttatt 36892647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 16431359 - 16431318
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  16431359 actagtgtaacgtcccgtgccaagcacgggatacattttatt 16431318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 16881249 - 16881290
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  16881249 actagtgtaacttcccgtgccaagcacgggattcattttatt 16881290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 22517025 - 22516985
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  22517025 actagtgtaacgccc-gtgccaagcacgggatacattttatt 22516985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 29073951 - 29073992
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  29073951 actagtgtaacttcccgtgccaagcacgggattcattttatt 29073992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 33444465 - 33444424
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| |||||||||||| |||| ||||||||||||    
T  33444465 actagtgtaacgccccgtgccaagtacggaatacattttatt 33444424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 41400340 - 41400431
Alignment:
Q  196 ataactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  41400340 ataactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 41400431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 45542275 - 45542187
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||    
T  45542275 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaatagggtttacacataaataagttttttagatatt 45542187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 21327399 - 21327489
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||| |||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||    
T  21327399 taactagtataacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 21327489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 2028683 - 2028595
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||| |||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||    
T  2028683 actagtataacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 2028595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 18415404 - 18415313
Alignment:
Q  190 atgtagataactagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  18415404 atgttgataactagtgtaacgccccgtgccaagcacgggatacattttatttaaaaaaaatttaacagggtttacacataaataagtttttt 18415313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 49009029 - 49008948
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||  ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  49009029 actagtgtaatgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagtttttt 49008948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 2844755 - 2844668
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        |||||||| | ||||||||||||||||||||||||||||    
T  2844755 actagtgtaacgccccgtgccaagcacgggatacattttatt-taaattttttaacagagattacacataaataagttttttagatatt 2844668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 32518972 - 32519055
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||| |||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  32518972 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 32519055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 28640795 - 28640884
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| |||||||||||| |||||||||||||||||        |||||||||||||| | ||| ||||||||||||||||||    
T  28640795 aactagtgtaacgccccgtgccaagtacgggatacattttatttaaatttttttaacagggtttaaaaatagataagttttttagatatt 28640884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 8111547 - 8111465
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||| ||| |||||||||||||| | |||||||||||||        ||||||||||||||||||||||||||||||||    
T  8111547 aactagtgcaacgccccgtgccaagcatgagatacattttatttaaatatgtttaacagggtttacacataaataagtttttt 8111465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 24780723 - 24780642
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| ||||||||||||||| ||||||||||||||        ||||||||||||||  ||||||||||||||||    
T  24780723 actagtgtaacgccccgtgccaagcacaggatacattttatttaaatttttttaacagggtttatgcataaataagtttttt 24780642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 16661991 - 16662032
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  16661991 actagtgtaacgccccgtgccaagcacgggatacattttatt 16662032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 38297090 - 38297049
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  38297090 actagtgtaacgccccgtgccaagcacgggatacattttatt 38297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 42438865 - 42438824
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  42438865 actagtgtaacgccccgtgccaagcacgggatacattttatt 42438824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 38980336 - 38980416
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||        |||||||| |||||| ||||||||||||||||    
T  38980336 actagtgtaacgccccgtgtcaagcacgggatatattttatt-taaattttttaacagagtttacccataaataagtttttt 38980416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 13499729 - 13499688
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  13499729 actagtataacgctccgtgccaagcacgggatacattttatt 13499688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 20279634 - 20279593
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  20279634 actagtgtaacttcccgtgccaagcacgggattcattttatt 20279593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 24452288 - 24452329
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||||||||||||||||| ||||||||    
T  24452288 actagtgtaacgtcccgtgccaagcacgggatatattttatt 24452329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 32052947 - 32052906
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  32052947 actagtgtaacgtcccgtgtcaagcacgggatacattttatt 32052906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 39560384 - 39560472
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  39560384 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagttttttagatatt 39560472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 22493708 - 22493797
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| |||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  22493708 aactagtgtaacgccccgtgctaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 22493797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 40835898 - 40835810
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||    
T  40835898 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaatacgttttttagatatt 40835810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 1593774 - 1593865
Alignment:
Q  196 ataactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||||| ||||||||||||||||||||||||||||||        ||||| |||||||||||||||||| ||||||||||||||    
T  1593774 ataactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaaaagggtttacacataaatacgttttttagatatt 1593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 5807563 - 5807651
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| |||||||||||||||| |||||||||||||        |||||||||||||||||||| ||||||||||||||||||    
T  5807563 actagtgtaacgccccgtgccaagcacgagatacattttatttaaatttttttaacagggtttacacatagataagttttttagatatt 5807651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 16485802 - 16485715
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||||    
T  16485802 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 16485715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 39005739 - 39005653
Alignment:
Q  201 tagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||| |||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||    
T  39005739 tagtgtaacgccccgtgccaagtacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttaaatatt 39005653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 16483357 - 16483275
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| |||||||||||||||||||||||||||| ||        ||||||  ||||||||||||||||||||||||    
T  16483357 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaactaggtttacacataaataagtttttt 16483275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 23104630 - 23104672
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  23104630 aactagtgtaacgccccgtgccaagcacgggatacattttatt 23104672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 25340154 - 25340113
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  25340154 actagtgtaacgccccgtgccaagcacgggatacattttatt 25340113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28907544 - 28907585
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  28907544 actagtgtaacgccccgtgccaagcacgggatacattttatt 28907585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28943939 - 28943980
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  28943939 actagtgtaacgccccgtgccaagcacgggatacattttatt 28943980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 1209774 - 1209815
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  1209774 actagtgtaacgtcccgtgccaagcacgggatacattttatt 1209815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 36786619 - 36786660
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  36786619 actagtgtaacgccccgtgccaagcacgggatatattttatt 36786660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 22383866 - 22383946
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttt 279  Q
    |||||||||||  ||||||||||||||||||| |||||||||         ||||| |||||||||||||| |||||||||    
T  22383866 actagtgtaacttcccgtgccaagcacgggattcattttatttaaaaaaaattaacggggtttacacataattaagttttt 22383946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 14459067 - 14459026
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||| || || |||||||||||||||||||||||||||    
T  14459067 actagtgttacgcctcgtgccaagcacgggatacattttatt 14459026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 22718527 - 22718568
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  22718527 actagtgtaacgcctcgtgccaagtacgggatacattttatt 22718568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 1244720 - 1244808
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| || |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  1244720 actagtgtaacgcctcgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 1244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 27019513 - 27019603
Alignment:
Q  198 aactagtgtaacacccc-gtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||||||||| |||||||||||| |||||||||||||        ||||||||||||||||||||||||||||| |||||||||    
T  27019513 aactagtgtaacacccccgtgccaagcacgagatacattttatttaaatttttttaacagggtttacacataaataagtttattagatatt 27019603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 39296724 - 39296644
Alignment:
Q  200 ctagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||| ||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||    
T  39296724 ctagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaatagggtttacacataaataagtttttt 39296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 48430282 - 48430194
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||  ||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||    
T  48430282 actagtgtaacgccatgtgccaagcacgggatacattttatttaaaatattttaacatggtttacacataaataagttttttagatatt 48430194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 7512648 - 7512596
Alignment:
Q  188 aaatgtagataactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  7512648 aaatgtatataactagtgtaacgccccgtgccaagcacgggatacattttatt 7512596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 5949047 - 5948965
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||  ||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  5949047 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 5948965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 4946373 - 4946332
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  4946373 actagtgtaacgccccgtgccaagcacgggatacattttatt 4946332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 6248255 - 6248298
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  6248255 taactagtgtaatgccccgtgccaagcacgggatacattttatt 6248298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 9765473 - 9765514
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  9765473 actagtgtaacgccccgtgccaagcacgggatatattttatt 9765514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 27074230 - 27074189
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  27074230 actagtgtaacgtcccgtgccaagcacgggatacattttatt 27074189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 27154321 - 27154280
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  27154321 actagtgtaacgtcccgtgccaagcacgggatacattttatt 27154280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 34807095 - 34807058
Alignment:
Q  250 ttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  34807095 ttaacagagtttacacataaataagttttttagatatt 34807058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 46809897 - 46809808
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||| ||||| ||||||||||||||||||    
T  46809897 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttatacatagataagttttttagatatt 46809808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 21949070 - 21949153
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||||| ||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||    
T  21949070 taactagtgtaacgccccgtgccaagcacgggatacattttatttaaaaaattttaacaggatttacacataaataagtttttt 21949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 6617886 - 6617799
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||||||||||||||||||||||||||||||        |||| |||||||||||||| |||||||||||||||||||    
T  6617886 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttatcagggtttacacat-aataagttttttagatatt 6617799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 31078711 - 31078795
Alignment:
Q  196 ataactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||        ||||||| ||||||||||||||||||||||||    
T  31078711 ataactagtgtaacgccccgtgccaaccacgagatacattttatttataattttttaacaaggtttacacataaataagtttttt 31078795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 34637713 - 34637795
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||  ||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  34637713 actagtgtaacgtcccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 34637795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 42054486 - 42054404
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| |||||||||||||||||||||||||||| ||        |||||| |||||||||||||||||||||||||    
T  42054486 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaactgggtttacacataaataagtttttt 42054404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 44042488 - 44042530
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  44042488 aactagtgtaacgccccgtgccaagcacgggatacattttatt 44042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 18781563 - 18781604
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  18781563 actagtgtaacgccccgtgccaagcacgggatacattttatt 18781604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 35508040 - 35508001
Alignment:
Q  201 tagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  35508040 tagtgtaacgccccgtgccaagcacgggatacattttatt 35508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 35116534 - 35116493
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  35116534 actagtgtaacgccccgtgtcaagcacgggatacattttatt 35116493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 37313028 - 37313069
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  37313028 actagtgtaacgccccgtgtcaagcacgggatacattttatt 37313069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 9174102 - 9174193
Alignment:
Q  195 gataactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||| ||| ||||||||||   |||||||| ||||||||        |||||||||||||| ||||||||||||||||||| ||||    
T  9174102 gataactagtgaaacgccccgtgccatatacgggatatattttatttaaattt-tttaacagggtttatacataaataagttttttaggtatt 9174193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 47397650 - 47397692
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||||  ||||||||||||||||||| |||||||||    
T  47397650 aactagtgtaacttcccgtgccaagcacgggattcattttatt 47397692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 4061612 - 4061700
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||||    
T  4061612 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 4061700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 22403226 - 22403145
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22403226 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatgttttaacagggtttacacataaataagtttttt 22403145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 37970033 - 37969945
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||||    
T  37970033 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaaatattttaacagggtttacacat-aataagttttttagatatt 37969945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 3335179 - 3335260
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| || |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  3335179 actagtgtaacgcctcgtgccaagcacgggatacattttatttaaacttttttaacagggtttacacataaataagtttttt 3335260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 28413297 - 28413378
Alignment:
Q  206 taacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||| ||||||||||| |||| |||||||||||||        ||||||||||||||||||||||||||||||||| |||||    
T  28413297 taacgccccgtgccaaacacgagatacattttatttaaaatattttaacagggtttacacataaataagttttttaaatatt 28413378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 33950910 - 33950999
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||||||| || |||| |||||||| |||||||||||||        ||||||| ||||| |||||||||||||||||||||||||    
T  33950910 aactagtgtaacgcctcgtgtcaagcacgagatacattttatttaaaatgttttaacaaggtttgcacataaataagttttttagatatt 33950999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 35347752 - 35347794
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  35347752 aactagtgtaacgccccgtgccaagcacgggatacattttatt 35347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 10118748 - 10118789
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  10118748 actagtgtaacgccccgtgccaagcacgggatacattttatt 10118789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 43847994 - 43847952
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  43847994 aactagtgtaacgccccgtgtcaagcacgggatacattttatt 43847952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 54613347 - 54613304
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||    
T  54613347 taactagtgtaacgccccgtgtcaagcatgggatacattttatt 54613304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 23305535 - 23305494
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  23305535 actagtgtaacttcccgtgccaagcacgggattcattttatt 23305494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 26702550 - 26702587
Alignment:
Q  203 gtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||  |||||||||||||||||||||||||||||    
T  26702550 gtgtaacgtcccgtgccaagcacgggatacattttatt 26702587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 38187506 - 38187547
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  38187506 actagtgtaacgtcccgtgtcaagcacgggatacattttatt 38187547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 15152881 - 15152969
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||| |||| ||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||    
T  15152881 actagtataacgccccgtgccaagcacgggatacattttatttaaatttttttaacatggtttacacataaataagttttttagatatt 15152969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 18898118 - 18898200
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| |||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  18898118 actagtgtaacgccccgtgccaagcacgggatacattttatttaaaatttttttaacagggtttacacataaataagtttttt 18898200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 9699928 - 9699971
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  9699928 taactagtgtaacgccccgtgccaagcacgggatacattttatt 9699971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 4268566 - 4268607
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  4268566 actagtgtaacgccccgtgccaagcacgggatacattttatt 4268607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 22515391 - 22515302
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    |||||||| ||| ||||||||   ||||| |||||||||||||        |||||||||||||| ||||||||||||||||||||||||    
T  22515391 aactagtgcaaccccccgtgcttggcacgtgatacattttatttaaatttttttaacagggtttatacataaataagttttttagatatt 22515302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 1424562 - 1424604
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||    
T  1424562 aactaatgtaacgccccgtgccaagcacgggatatattttatt 1424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 14183164 - 14183123
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  14183164 actagtgtaacgcctcgtgccaagtacgggatacattttatt 14183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 26545 - 26463
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    |||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||| ||||||    
T  26545 aactagtgtaacgccccgtgccaagcacgggatacattttatttaaatttttttaacagggtttacacatgaataaatttttt 26463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 193875 - 193957
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacatttta-ttnnnnnnnntttaacagggtttacacataaataagtttttt 280  Q
    ||||||||||| |||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  193875 actagtgtaacgccccgtgccaagcacgggatacattttatttaaattttttttaacagggtttacacataaataagtttttt 193957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 40268600 - 40268530
Alignment:
Q  217 gccaagcacgggatacattttattnnnnnnnntttaacagggtttacacataaataagttttttagatatt 287  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||    
T  40268600 gccaagcacgggatatattttatttaaatttttttaacagggtttacacataaataagttttttagatatt 40268530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 12253590 - 12253633
Alignment:
Q  197 taactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  12253590 taactagtgtaacgccccgtgccaagcacgggatacattttatt 12253633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 39118927 - 39118968
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  39118927 actagtgtaacgccccgtgccaagcacgggatacattttatt 39118968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 42839915 - 42839956
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  42839915 actagtgtaacgccccgtgccaagcacgggatacattttatt 42839956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 4647225 - 4647266
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  4647225 actagtgtaacgccccgtgccaagcacgggatatattttatt 4647266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 6909194 - 6909152
Alignment:
Q  198 aactagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||| |||||||||||||||| |||||||| ||||    
T  6909194 aactagtgtaacgccccgtgccaagcacgagatacattatatt 6909152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 42227301 - 42227260
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  42227301 actagtgtaacttcccgtgccaagcacgggattcattttatt 42227260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 14290 - 14249
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  14290 actagtgtaactccccgagccaagcacgggatacattttatt 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 50606 - 50647
Alignment:
Q  199 actagtgtaacaccccgtgccaagcacgggatacattttatt 240  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  50606 actagtgtaacttcccgtgccaagcacgggattcattttatt 50647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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