View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_30 (Length: 278)

Name: NF19145_low_30
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_30
NF19145_low_30
[»] chr4 (38 HSPs)
chr4 (7-278)||(48852901-48853172)
chr4 (76-277)||(45371713-45371914)
chr4 (7-229)||(49043738-49043960)
chr4 (7-186)||(49038454-49038627)
chr4 (7-146)||(45365790-45365929)
chr4 (73-146)||(7790432-7790505)
chr4 (73-146)||(7773461-7773534)
chr4 (74-146)||(7878735-7878807)
chr4 (76-138)||(48864395-48864457)
chr4 (73-146)||(7771747-7771820)
chr4 (82-139)||(48147358-48147415)
chr4 (13-229)||(49048131-49048346)
chr4 (73-144)||(7908656-7908727)
chr4 (55-150)||(48861636-48861731)
chr4 (76-146)||(7765994-7766064)
chr4 (73-137)||(7813838-7813902)
chr4 (76-140)||(45384531-45384595)
chr4 (76-146)||(7786816-7786886)
chr4 (79-190)||(37826632-37826749)
chr4 (80-264)||(48156072-48156262)
chr4 (73-137)||(7800998-7801062)
chr4 (170-278)||(48861477-48861589)
chr4 (79-146)||(50666667-50666734)
chr4 (80-146)||(7237386-7237452)
chr4 (73-143)||(48870915-48870985)
chr4 (73-143)||(48876219-48876289)
chr4 (73-143)||(48886601-48886671)
chr4 (217-278)||(49043975-49044036)
chr4 (89-137)||(48903316-48903364)
chr4 (163-263)||(45384630-45384730)
chr4 (239-278)||(48705190-48705229)
chr4 (73-192)||(48863571-48863690)
chr4 (107-146)||(48899092-48899131)
chr4 (73-135)||(7823332-7823394)
chr4 (229-278)||(48898954-48899003)
chr4 (235-275)||(37826800-37826840)
chr4 (214-278)||(48147496-48147560)
chr4 (88-136)||(50672860-50672908)
[»] chr3 (4 HSPs)
chr3 (80-278)||(11005571-11005769)
chr3 (80-278)||(11024146-11024344)
chr3 (80-278)||(11015134-11015332)
chr3 (76-278)||(47451539-47451747)
[»] chr6 (3 HSPs)
chr6 (7-267)||(21016052-21016312)
chr6 (76-134)||(21979267-21979325)
chr6 (239-277)||(21979439-21979477)
[»] chr5 (6 HSPs)
chr5 (14-142)||(29688485-29688613)
chr5 (76-186)||(42561972-42562082)
chr5 (79-197)||(9120058-9120182)
chr5 (94-146)||(179410-179462)
chr5 (79-142)||(29712083-29712146)
chr5 (232-277)||(29696448-29696493)
[»] chr7 (1 HSPs)
chr7 (76-147)||(48884175-48884246)
[»] chr8 (9 HSPs)
chr8 (88-197)||(4031577-4031681)
chr8 (80-137)||(12200703-12200760)
chr8 (80-137)||(12445131-12445188)
chr8 (76-137)||(15349244-15349305)
chr8 (82-139)||(4962161-4962221)
chr8 (80-141)||(12195681-12195742)
chr8 (80-141)||(12440109-12440170)
chr8 (244-276)||(12200558-12200590)
chr8 (244-276)||(12444986-12445018)
[»] chr1 (6 HSPs)
chr1 (77-186)||(24367477-24367586)
chr1 (76-186)||(24340720-24340833)
chr1 (76-186)||(24353085-24353198)
chr1 (79-186)||(24310525-24310635)
chr1 (77-144)||(24416132-24416199)
chr1 (76-129)||(24323139-24323192)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 48853172 - 48852901
Alignment:
Q  7 tccaagaatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgc 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48853172 tccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgc 48853073  T
Q  107 actttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaatacccacaaatcgcaataggtaggtt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48853072 actttgtattctttcatgacccatatttcaactgtatcatcccccatgacccatatacttagaaattctctaaatacccacaaatcgcaataggtaggtt 48852973  T
Q  207 catggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852972 catggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 48852901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 277
Target Start/End: Original strand, 45371713 - 45371914
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattct 175  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||  | | ||||| | ||| ||||||| |    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatcttccttcttagcccaaagactgagaaatttt 45371812  T
Q  176 ctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataa 275  Q
    |  |||||||| ||||| ||||| |||||  || ||| |||| |||| |||||||||| |||||||||||||| |||||||||||||||||| | |||||    
T  45371813 ccgaatacccaaaaatcacaatatgtaggaccagggtcaaaaccatcaggcaaagacatctctaaaagtttccgttccattaaatcaaaggcaagaataa 45371912  T
Q  276 ca 277  Q
    ||    
T  45371913 ca 45371914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 49043738 - 49043960
Alignment:
Q  7 tccaagaatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgc 106  Q
    ||||| |||||||||| | ||||||||||||||||| |  ||||| ||||||||||||  |  |  ||||| |||||||||||||||||| |||||| ||    
T  49043738 tccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgc 49043837  T
Q  107 actttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaatacccacaaatcgcaataggtaggtt 206  Q
    ||||||||||||||||| ||||||||||||||| |||||| |    | | ||||| ||| |||| ||| | ||||||||||||||| ||||  |||||||    
T  49043838 actttgtattctttcatcacccatatttcaactatatcattctgtctagtccatacactaagaagttcaccaaatacccacaaatcacaatctgtaggtt 49043937  T
Q  207 catggtaaaaatcatccggcaaa 229  Q
    |||| | ||||||| | ||||||    
T  49043938 catgttcaaaatcacctggcaaa 49043960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 49038454 - 49038627
Alignment:
Q  7 tccaagaatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgc 106  Q
    ||||| ||||| |||||| |||||||||||||| ||||||||||||      ||||||  ||||  ||| ||||||||||||||||||||||||||| |     
T  49038454 tccaataatatgaccactttttgtacaacatataggggaaaagtag------ggaatgccactaatagacagaacaagagtcttagtccaagacgaatga 49038547  T
Q  107 actttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaataccca 186  Q
    ||||||||||||||||| |||||||||||||| ||| ||  | |||| ||||||| ||| |||||||||| |||||||||    
T  49038548 actttgtattctttcatcacccatatttcaacggtagcacgctccatagcccatacactgagaaattctcgaaataccca 49038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 45365790 - 45365929
Alignment:
Q  7 tccaagaatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgc 106  Q
    ||||| ||||||||| || |||||| | ||||  ||||||||||| ||||||||||||  |  |  || ||||||  ||||||| |||||||||||||||    
T  45365790 tccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgc 45365889  T
Q  107 actttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  45365890 actttatattctttcatcacccatatttcaactgtatcat 45365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 7790505 - 7790432
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  7790505 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcat 7790432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 7773461 - 7773534
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||||||||||||  ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7773461 agaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7773534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 7878807 - 7878735
Alignment:
Q  74 gaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    |||||||||||||| ||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaac 138  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 7771820 - 7771747
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||||||    
T  7771820 agaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcat 7771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  82 aagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaact 139  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 49048131 - 49048346
Alignment:
Q  13 aatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgcactttg 112  Q
    |||||||||||| |||||||  |||||||| || ||| | || |||||||||  |  |  ||||| ||||| |||||||||||| |||||| |||||||     
T  49048131 aatatcaccactttttgtacggcatattggagagaagcaatgggtgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcacttta 49048230  T
Q  113 tattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaatacccacaaatcgcaataggtaggttcatggt 212  Q
    || |||||||| ||||||||||||||| ||||||||  | | | ||||| ||| ||||| || |  |||||||||||||| ||||  ||||||| ||| |    
T  49048231 tactctttcatcacccatatttcaactatatcatcctgcttagtccatacactgagaaactcac-caatacccacaaatcacaatctgtaggttaatgtt 49048329  T
Q  213 aaaaatcatccggcaaa 229  Q
     ||||||| | ||||||    
T  49048330 caaaatcacctggcaaa 49048346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 7908727 - 7908656
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatc 144  Q
    ||||||||||||||| ||| ||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||    
T  7908727 agaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatc 7908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 48861731 - 48861636
Alignment:
Q  55 agtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccc 150  Q
    |||||||||||||||| ||||||    || ||| |||||||||||| || |||||||||||||||| || ||||||||||||| ||||||||||||    
T  48861731 agtgggaatggaactaaaagaaaaggaaatagtattagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcatcccc 48861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 7766064 - 7765994
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||| ||||||||||||| ||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcat 7765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7813902 - 7813838
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||  |||||||||||||    
T  7813902 agaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 45384531 - 45384595
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactg 140  Q
    ||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 7786886 - 7786816
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    |||||||||||||||| |||||||  || |||| |||||||||||||| ||||||||||||| ||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcat 7786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 37826632 - 37826749
Alignment:
Q  79 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat------cccccatggcccatatacttagaaat 172  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||| || || || ||||| ||        ||||||||||||| ||| ||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  173 tctctaaatacccacaaa 190  Q
    |||| |||||||||||||    
T  37826732 tctccaaatacccacaaa 37826749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 48156072 - 48156262
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat---ccc---ccatggcccatatacttagaaatt 173  Q
    |||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||||||||| | ||||   |||   | |  ||||||| ||| |||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaatt 48156171  T
Q  174 ctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaa 264  Q
    ||| ||||||||||||||  ||||    || |  ||||| |||| |||| || |||| || ||||||||||||||  ||||||||||||||    
T  48156172 ctccaaatacccacaaattacaattatcagttgtatggtgaaaaccatcaggaaaaggcatctctaaaagtttccgatccattaaatcaaa 48156262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7801062 - 7800998
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    ||||||||||||||| ||| ||||||||||| |||||||||| |||||||  |||||||||||||    
T  7801062 agaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 48861589 - 48861477
Alignment:
Q  170 aattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttcc----attaaatcaaag 265  Q
    |||| ||| |||||||||||||| ||||| ||||||||||||| ||||| ||   | ||||||| ||||||||||||| |||||    |||||||||||     
T  48861589 aattttcttaatacccacaaatcacaatatgtaggttcatggtcaaaattatggagaaaagacatctctaaaagtttcttttccatatattaaatcaaat 48861490  T
Q  266 gccacaataacat 278  Q
    || ||||||||||    
T  48861489 gcaacaataacat 48861477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 50666734 - 50666667
Alignment:
Q  79 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| ||| ||||||| ||||| ||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcat 50666667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 7237386 - 7237452
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||| ||||||||| ||| ||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcat 7237452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 48870985 - 48870915
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 143  Q
    |||||||||||||||||| |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||    
T  48870985 agaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 48870915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 48876289 - 48876219
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 143  Q
    |||||||||||||||||| |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||    
T  48876289 agaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 48876219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 48886671 - 48886601
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 143  Q
    |||||||||||||||||| |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||    
T  48886671 agaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 48886601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 49043975 - 49044036
Alignment:
Q  217 atcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    |||||| |||||||| |  ||||||||||||||||| |||||||||||||| ||||||||||    
T  49043975 atcatctggcaaagatatgtctaaaagtttcctttcaattaaatcaaaggcaacaataacat 49044036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 48903364 - 48903316
Alignment:
Q  89 ttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 45384630 - 45384730
Alignment:
Q  163 acttagaaattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatca 262  Q
    ||| |||||||||| ||||||||||||| | |||| |||||||||| ||| ||| ||||| ||||||  ||  |  ||||||||| |||| |||||||||    
T  45384630 actgagaaattctccaaatacccacaaaccacaatcggtaggttcacggttaaactcatctggcaaatgcatataaaaaagtttcatttcgattaaatca 45384729  T
Q  263 a 263  Q
    |    
T  45384730 a 45384730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 48705190 - 48705229
Alignment:
Q  239 aaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  48705190 aaaagttccctttccattaaatcaaaggcaacaataacat 48705229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 48863690 - 48863571
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaat 172  Q
    |||||| |||||||| ||| ||||||| ||| |||||  |||||||| ||| |||||||| |||||  ||| |||||||    |||||| ||| ||| ||    
T  48863690 agaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaaccttatgatcccccgaaacccatagactgagagat 48863591  T
Q  173 tctctaaatacccacaaatc 192  Q
     ||||||||||||| |||||    
T  48863590 cctctaaatacccataaatc 48863571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 48899131 - 48899092
Alignment:
Q  107 actttgtattctttcatgacccatatttcaactgtatcat 146  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  48899131 actttatattctttcatcacccatatttcaactgtatcat 48899092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 7823394 - 7823332
Alignment:
Q  73 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttc 135  Q
    ||||||||||||||| ||| |||||||| || |||||||||| ||||| |  |||||||||||    
T  7823394 agaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 48899003 - 48898954
Alignment:
Q  229 agacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||||| |||||| |||||||||||| ||||||||||||| ||||| ||||    
T  48899003 agacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 48898954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 37826800 - 37826840
Alignment:
Q  235 ctctaaaagtttcctttccattaaatcaaaggccacaataa 275  Q
    |||||| ||||||||||||||||||| |||||| |||||||    
T  37826800 ctctaacagtttcctttccattaaattaaaggcaacaataa 37826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 48147496 - 48147560
Alignment:
Q  214 aaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    |||| |||| || |||| || |||||||||| ||||||||||||||||||| || | ||||||||    
T  48147496 aaaaccatctggaaaaggcatctctaaaagtctcctttccattaaatcaaatgcaataataacat 48147560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 50672908 - 50672860
Alignment:
Q  88 cttagtccaagacgaacgcactttgtattctttcatgacccatatttca 136  Q
    ||||||||| |||||| ||| |||||||| |||||| ||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 11005571 - 11005769
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaa 179  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||| ||| |||||||||| ||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 11005670  T
Q  180 atacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||| ||||||||| ||||   |||||||||| | |||| |||  || |||| || |||||||||||||||||||| |||||||||| | ||||||||||    
T  11005671 atatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacat 11005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 11024146 - 11024344
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||  || ||||||| ||||||| ||| |||||||||| ||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgttacaccccccatagcccatagactgagaaattctccaa 11024245  T
Q  180 atacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||| ||||||||| ||||   |||||||||| | |||| |||| || |||| || ||| ||||||| |||||||| |||||||||||| | ||||||||    
T  11024246 atatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaatcaaaggcaataataacat 11024344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 11015134 - 11015332
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaa 179  Q
    |||||||| |||  |||||||||| ||||||||||||||||||| |||||||||||||||||  ||||| |||| ||||||| |||||||||||||| ||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcctccatagcccatagacttagaaattctccaa 11015233  T
Q  180 atacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 278  Q
    ||| ||||||||| ||||   ||||||||| || |||| |||| || |||  || ||| |||||||||||||||| |||||||||| | ||||||||||    
T  11015234 atatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaataacat 11015332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 278
Target Start/End: Original strand, 47451539 - 47451747
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatccc------ccatggcccatatacttaga 169  Q
    |||||||||||||||   ||||||||||   ||||||||||||||||| ||||||||||||||| ||||||         |||   ||| || ||| |||    
T  47451539 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaaga 47451638  T
Q  170 aattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggcca 269  Q
    ||||||| ||||||||||||| | |||| |||||||||||||| ||||||||| ||||||  ||  ||||||| ||| ||||||||||||||||| ||      
T  47451639 aattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcag 47451738  T
Q  270 caataacat 278  Q
    |||||||||    
T  47451739 caataacat 47451747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 21016312 - 21016052
Alignment:
Q  7 tccaagaatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgc 106  Q
    ||||| |||||||||||| ||||||||||||||||| || || ||  |||||||||||  |  |  ||| | |  |||||||||||||||||||||| |     
T  21016312 tccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgt 21016213  T
Q  107 actttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaatacccacaaatcgcaataggtaggtt 206  Q
    ||||||||||||||||| ||||||||||||||| |||||    |||| | ||||| ||| | |||||| |  |||||||||||||| |||||  ||||||    
T  21016212 actttgtattctttcataacccatatttcaactatatcactatccatagtccatacactcaaaaattcaccgaatacccacaaatcacaatatataggtt 21016113  T
Q  207 catggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggc 267  Q
    |||| |  | |||||||||||||||||  || |||||||| ||||| || |||||||||||    
T  21016112 catgttccatatcatccggcaaagacatgtcgaaaagttttctttctatcaaatcaaaggc 21016052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 21979267 - 21979325
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatattt 134  Q
    |||||||||  ||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  21979267 aagaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 21979439 - 21979477
Alignment:
Q  239 aaaagtttcctttccattaaatcaaaggccacaataaca 277  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  21979439 aaaagtttcctttctattaaatcaaaggcaacaataaca 21979477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 29688613 - 29688485
Alignment:
Q  14 atatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactacaagaaagaacaagagtcttagtccaagacgaacgcactttgt 113  Q
    ||||||||||| ||||||||| || | ||  ||||||||||| ||||||||  || | |||||||||| |||||||| |||||||||||  |||| ||||    
T  29688613 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgt 29688514  T
Q  114 attctttcatgacccatatttcaactgta 142  Q
    ||| |||||| ||||||||||||||||||    
T  29688513 attttttcatcacccatatttcaactgta 29688485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 42561972 - 42562082
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattct 175  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||| |||||  |||| |||| ||    ||||| ||| |||||| ||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgtccctcaaaatccatagactgagaaatcct 42562071  T
Q  176 ctaaataccca 186  Q
    |||||||||||    
T  42562072 ctaaataccca 42562082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 9120182 - 9120058
Alignment:
Q  79 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat------cccccatggcccatatacttagaaat 172  Q
    ||||||||| ||  ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||         |||| ||||||||||| ||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaat 9120083  T
Q  173 tctctaaatacccacaaatcgcaat 197  Q
    |||| ||||||||||| ||| ||||    
T  9120082 tctccaaatacccacacatcacaat 9120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 179462 - 179410
Alignment:
Q  94 ccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 146  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 29712083 - 29712146
Alignment:
Q  79 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta 142  Q
    ||||||||||||||||||||| ||   ||| ||||||| || ||| ||||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgta 29712146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 29696493 - 29696448
Alignment:
Q  232 caactctaaaagtttcctttccattaaatcaaaggccacaataaca 277  Q
    |||||||| |||||||||||| ||||||| |||||| |||||||||    
T  29696493 caactctagaagtttcctttcaattaaatgaaaggcaacaataaca 29696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 48884246 - 48884175
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatc 147  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||| ||| ||||||||||| |||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcatc 48884175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 4031577 - 4031681
Alignment:
Q  88 cttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctctaaatacccac 187  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||||| || ||||||||| ||     | ||| | |||| ||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcccccacgg-----agactaacaaatcctctaaatacccac 4031671  T
Q  188 aaatcgcaat 197  Q
    ||||| ||||    
T  4031672 aaatcacaat 4031681  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 12200760 - 12200703
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||  ||||||||||||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 12445188 - 12445131
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||  ||||||||||||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 15349305 - 15349244
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 137  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| |||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 4962161 - 4962221
Alignment:
Q  82 aagagtcttagtccaagacga---acgcactttgtattctttcatgacccatatttcaact 139  Q
    ||||||||||||||| |||||   | ||| ||||||||||||||| |||||||||||||||    
T  4962161 aagagtcttagtccacgacgacgaatgcagtttgtattctttcatcacccatatttcaact 4962221  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12195742 - 12195681
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgt 141  Q
    |||||||||||||||||||| ||  |   |||||||||||||||  ||||||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgt 12195681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12440170 - 12440109
Alignment:
Q  80 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgt 141  Q
    |||||||||||||||||||| ||  |   |||||||||||||||  ||||||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgt 12440109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 12200590 - 12200558
Alignment:
Q  244 tttcctttccattaaatcaaaggccacaataac 276  Q
    |||||||||||||||||||||||| ||||||||    
T  12200590 tttcctttccattaaatcaaaggcaacaataac 12200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 12445018 - 12444986
Alignment:
Q  244 tttcctttccattaaatcaaaggccacaataac 276  Q
    |||||||||||||||||||||||| ||||||||    
T  12445018 tttcctttccattaaatcaaaggcaacaataac 12444986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 24367586 - 24367477
Alignment:
Q  77 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatggcccatatacttagaaattctc 176  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||| | || ||||||   || ||   |||||| ||| |||||| |||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaagtgtatctctcctcaaaacccatagactgagaaatcctc 24367487  T
Q  177 taaataccca 186  Q
    ||||||||||    
T  24367486 taaataccca 24367477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 24340833 - 24340720
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatggcccatatacttagaaat 172  Q
    |||||||||||| ||||||||||| ||  ||||||| ||||||||||| ||||| || ||||| |||   |||||| ||||  |||||| ||||||||||    
T  24340833 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaat 24340734  T
Q  173 tctctaaataccca 186  Q
     ||||| |||||||    
T  24340733 cctctacataccca 24340720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 24353198 - 24353085
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatggcccatatacttagaaat 172  Q
    |||||||||||| ||||||||||| ||  ||||||| ||||||||||| ||||| || ||||| |||   |||||| ||||  |||||| ||||||||||    
T  24353198 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaat 24353099  T
Q  173 tctctaaataccca 186  Q
     ||||| |||||||    
T  24353098 cctctacataccca 24353085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 24310635 - 24310525
Alignment:
Q  79 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatc---ccccatggcccatatacttagaaattct 175  Q
    ||||||||| ||| ||||||| ||  ||||||||||||||||||| |||||||| |||||| |||| ||   || |||  |||||| ||| |||||| ||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 24310536  T
Q  176 ctaaataccca 186  Q
    |||||||||||    
T  24310535 ctaaataccca 24310525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  77 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatc 144  Q
    ||||||||||| ||||||||||| ||  || |||||||||||||||| |||||||| |||||| ||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  76 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgaccca 129  Q
    |||||||||||| |||||| |||| ||  ||||||||||||||||||| |||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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