View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_36 (Length: 250)

Name: NF19145_low_36
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_36
NF19145_low_36
[»] chr2 (7 HSPs)
chr2 (17-237)||(2320981-2321201)
chr2 (17-237)||(2303280-2303500)
chr2 (17-231)||(2293673-2293887)
chr2 (17-231)||(2310004-2310218)
chr2 (17-232)||(2330555-2330770)
chr2 (26-232)||(2350861-2351067)
chr2 (17-235)||(2326837-2327055)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 2321201 - 2320981
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2321201 caaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccc 2321102  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321101 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 2321002  T
Q  217 tttcattctcactcaactttc 237  Q
    |||||||||||||||||||||    
T  2321001 tttcattctcactcaactttc 2320981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 2303500 - 2303280
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |    
T  2303500 caaataccgaagtttctgcaattcttcctctttcacttcctccttctctccattctcatcaccacccatcacctcccgaatctcctccacaagcctcctc 2303401  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  2303400 tgcacttctgggtacttaaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaacca 2303301  T
Q  217 tttcattctcactcaactttc 237  Q
    |||||||||||||||||||||    
T  2303300 tttcattctcactcaactttc 2303280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 2293887 - 2293673
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  2293887 caaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccc 2293788  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  2293787 tgcacttctgggtacttcactacattcgccataatccactgcaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaacca 2293688  T
Q  217 tttcattctcactca 231  Q
    |||||||||||||||    
T  2293687 tttcattctcactca 2293673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 2310218 - 2310004
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  2310218 caaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccc 2310119  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    | |||||| ||||||||||||| ||||||||||||||||| ||||  |||||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  2310118 ttcacttctgggtacttcaccacattcgccataatccactccaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaacca 2310019  T
Q  217 tttcattctcactca 231  Q
    |||||||||||||||    
T  2310018 tttcattctcactca 2310004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 2330770 - 2330555
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||   ||||| | ||||||||||||   |||||||||||||||| |||||    
T  2330770 caaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatcatcgccacccatcacctctgtaatctcctccacaagcttcccc 2330671  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    || || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||    
T  2330670 tgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatca 2330571  T
Q  217 tttcattctcactcaa 232  Q
    |||||| |||||||||    
T  2330570 tttcatcctcactcaa 2330555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 2351067 - 2350861
Alignment:
Q  26 aagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttcc 125  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |||||| |||||||||||| | |||||| |||||||||||||| ||||| ||     
T  2351067 aagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcg 2350968  T
Q  126 gggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattct 225  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||  ||||| | ||||||||||| ||||||||| ||||||||||||  |    
T  2350967 gggtacttcaccaaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatctt 2350868  T
Q  226 cactcaa 232  Q
    |||||||    
T  2350867 cactcaa 2350861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 2327055 - 2326837
Alignment:
Q  17 caaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccc 116  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| ||    |||||| |||||| | ||| | |||||||| |||||||||||      
T  2327055 caaataccgaagtttatgcaagtcttcctctttcacttcctccttctctacaacaccatcaccacccatgaactccctaatctcctgcacaagcctcctt 2326956  T
Q  117 tgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaacca 216  Q
    || || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||||||||||||||||||||| ||||||    
T  2326955 tgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaacca 2326856  T
Q  217 tttcattctcactcaactt 235  Q
    |||||| |||| |||||||    
T  2326855 tttcatcctcagtcaactt 2326837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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